Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.1e-304 1047.7 554 100.0
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.2e-278 961.8 554 94.2
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 5.5e-120 435.6 460 50.0
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.6e-119 434.1 470 47.9
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.1e-119 433.7 467 48.4
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 7.5e-117 425.2 462 49.4
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 9.7e-117 424.9 462 50.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 4.8e-116 422.5 465 49.2
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 8.3e-116 421.8 458 49.3
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.3e-116 421.8 458 49.3
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.3e-115 419.1 429 51.5
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-114 417.2 480 48.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.5e-114 416.0 429 51.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.3e-113 414.5 470 48.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.3e-113 414.5 429 49.9
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-113 414.1 458 48.9
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 2.2e-113 413.7 464 47.4
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.9e-113 413.3 469 47.8
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.8e-113 412.9 465 46.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 6.5e-113 412.1 458 47.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-112 411.4 442 49.3
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.5e-112 411.0 473 46.5
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.5e-112 410.2 480 48.3
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.5e-112 410.2 464 46.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.2e-112 409.8 439 48.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.2e-112 409.8 461 47.9
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 5.5e-112 409.1 439 50.1
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 7.2e-112 408.7 473 46.5
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.6e-111 407.5 459 48.4
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.1e-111 407.1 458 47.8
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 2.1e-111 407.1 466 45.1
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 2.7e-111 406.8 460 48.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 4.7e-111 406.0 470 47.0
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.0e-110 404.8 460 47.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.0e-110 404.8 473 46.5
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.8e-110 404.1 458 47.2
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.0e-110 403.3 461 46.6
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.0e-110 402.9 439 48.7
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 4.0e-110 402.9 439 49.2
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.2e-110 402.5 451 46.8
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 2.0e-109 400.6 465 45.6
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.6e-109 400.2 469 45.2
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.4e-109 399.4 456 46.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 5.7e-109 399.1 464 45.5
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 5.7e-109 399.1 453 47.5
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 5.7e-109 399.1 464 44.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.5e-109 398.7 461 47.3
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 9.8e-109 398.3 440 49.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 9.8e-109 398.3 452 47.3
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.3e-108 397.9 467 45.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-108 397.5 464 45.0
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.7e-108 397.5 436 47.5
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 4.8e-108 396.0 460 47.0
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.1e-107 394.8 436 48.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.4e-107 394.4 478 45.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 2.4e-107 393.7 457 45.7
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 7.0e-107 392.1 446 46.4
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 9.1e-107 391.7 423 50.1
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 9.1e-107 391.7 458 46.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.2e-106 391.3 465 45.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.6e-106 391.0 457 46.0
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 7.7e-106 388.7 459 49.7
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 2.3e-105 387.1 459 45.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.3e-105 387.1 465 43.9
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 2.5e-104 383.6 461 45.8
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.5e-104 383.6 442 45.9
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 3.3e-104 383.3 469 44.6
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 7.2e-104 382.1 464 43.8
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 7.2e-104 382.1 465 44.3
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.6e-103 380.9 431 45.5
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 2.1e-103 380.6 458 47.4
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.8e-103 380.2 471 44.8
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.8e-103 380.2 431 47.3
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.0e-102 376.7 480 43.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.6e-101 373.6 441 46.5
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 4.4e-101 372.9 458 45.0
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.9e-100 369.4 438 47.3
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.4e-99 367.9 469 43.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.4e-99 367.9 432 46.5
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.2e-98 364.8 458 43.9
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 7.8e-98 362.1 460 42.8
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.3e-97 360.5 436 46.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 5.0e-97 359.4 460 45.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-96 358.2 500 39.6
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.5e-96 357.8 400 47.2
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.5e-96 357.1 393 48.6
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 4.3e-96 356.3 464 44.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 4.3e-96 356.3 460 45.9
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 9.5e-96 355.1 464 44.2
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.0e-94 351.7 460 42.6
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-94 351.3 460 42.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.6e-93 347.1 464 44.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 7.5e-93 345.5 440 43.6
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 9.8e-93 345.1 394 47.0
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 8.3e-92 342.0 417 45.3
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.0e-91 339.0 437 43.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.2e-90 338.2 416 44.2
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 3.5e-90 336.7 440 44.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.1e-88 331.6 440 43.2
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 8.0e-87 325.5 426 42.5
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.1e-86 325.1 280 56.1
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 4.4e-85 319.7 389 44.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 7.1e-83 312.4 416 42.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.2e-83 312.0 426 40.4
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 4.3e-80 303.1 393 42.0
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-78 297.4 364 47.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.2e-77 295.0 519 36.2
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.4e-75 288.1 470 37.7
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 6.2e-71 272.7 264 51.1
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.1e-63 247.7 386 37.3
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 6.4e-60 236.1 218 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 6.0e-58 229.6 438 34.9
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-56 224.2 188 58.0
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.6e-56 223.0 202 55.4
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 7.1e-51 206.1 279 42.3
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.6e-50 203.4 417 35.3
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 7.9e-50 202.6 178 55.6
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.3e-41 175.3 230 43.9
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.4e-38 164.5 322 31.1
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.9e-36 157.5 201 43.3
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.6e-34 151.8 442 30.3
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.1e-34 149.8 135 54.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.8e-30 138.3 276 31.5
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.3e-28 132.1 213 36.6
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.7e-28 131.7 331 37.2
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 3.8e-28 130.6 109 56.0
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.2e-26 125.6 89 66.3
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-26 125.2 121 52.1
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.4e-22 112.1 73 65.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.9e-22 109.8 143 44.8
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 6.1e-18 96.7 165 35.8
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.6e-16 91.3 72 59.7
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.4e-14 85.5 140 39.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.5e-08 65.5 50 58.0
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 3.3e-08 64.3 46 60.9
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 7.0e-06 56.6 103 33.0


User provided reference genes

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