Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.6e-97 359.4 173 100.0
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 1.3e-43 180.3 155 54.8
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.2e-43 179.5 147 59.2
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.0e-43 178.3 139 59.7
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 5.0e-43 178.3 152 57.9
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.4e-42 176.8 136 59.6
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 3.6e-41 172.2 131 62.6
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 7.9e-41 171.0 130 63.1
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.0e-40 170.6 133 60.9
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.3e-40 169.5 140 58.6
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 6.7e-40 167.9 148 56.1
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.3e-38 163.7 140 56.4
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.3e-38 163.7 138 57.2
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.3e-38 163.7 142 52.1
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.8e-38 162.5 134 55.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.4e-37 160.2 130 56.2
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.8e-37 159.8 158 52.5
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 3.1e-37 159.1 156 50.0
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 4.1e-37 158.7 143 53.8
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.1e-37 158.7 133 54.1
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.1e-37 158.7 133 54.1
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.1e-37 158.7 162 51.2
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 5.3e-37 158.3 137 54.7
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.3e-37 158.3 134 58.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 9.1e-37 157.5 133 54.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.2e-36 157.1 134 57.5
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.5e-36 156.8 167 51.5
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.5e-36 156.8 158 50.0
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.6e-36 156.0 153 51.6
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 4.5e-36 155.2 146 51.4
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 5.9e-36 154.8 113 61.9
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.0e-35 154.1 157 48.4
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.3e-35 153.7 156 50.6
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 5.0e-35 151.8 158 46.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 5.0e-35 151.8 149 49.7
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.5e-35 151.4 133 50.4
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 8.5e-35 151.0 144 52.1
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.1e-34 150.6 129 54.3
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.1e-34 150.6 141 50.4
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 3.2e-34 149.1 119 56.3
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.2e-34 149.1 139 52.5
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.2e-34 149.1 137 53.3
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 7.2e-34 147.9 142 53.5
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 9.4e-34 147.5 132 53.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 9.4e-34 147.5 162 45.1
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.2e-33 147.1 157 48.4
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.6e-33 146.7 154 50.0
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.6e-33 146.7 138 50.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.7e-33 146.0 148 52.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.6e-33 145.6 150 46.7
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 4.7e-33 145.2 144 45.8
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.0e-32 144.1 131 55.7
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 1.0e-32 144.1 163 49.1
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.4e-32 143.7 174 51.7
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.8e-32 143.3 157 50.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.8e-32 143.3 167 47.9
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.3e-32 142.9 144 49.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 5.1e-32 141.7 158 47.5
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 6.7e-32 141.4 138 52.2
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 6.7e-32 141.4 143 49.0
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.5e-31 140.2 141 46.8
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.5e-31 140.2 162 50.6
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.0e-31 139.8 154 46.8
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.6e-31 139.4 173 42.2
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.6e-31 139.4 138 52.9
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.3e-31 139.0 142 50.7
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 3.3e-31 139.0 154 46.8
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 7.4e-31 137.9 145 51.0
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 7.4e-31 137.9 145 51.0
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 7.4e-31 137.9 145 51.0
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 7.4e-31 137.9 145 51.0
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 7.4e-31 137.9 145 51.0
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 7.4e-31 137.9 120 55.0
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 9.7e-31 137.5 160 47.5
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.3e-30 137.1 93 63.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.3e-30 137.1 121 52.9
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-30 137.1 140 46.4
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.7e-30 136.7 114 56.1
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.7e-30 136.7 123 52.0
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.7e-30 136.7 137 44.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.2e-30 136.3 121 49.6
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.2e-30 136.3 121 50.4
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.8e-30 136.0 114 55.3
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 2.8e-30 136.0 123 53.7
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.8e-30 136.0 114 54.4
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 2.8e-30 136.0 149 45.6
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 2.8e-30 136.0 140 46.4
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 3.7e-30 135.6 136 51.5
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.8e-30 135.2 160 46.2
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.2e-30 134.4 136 51.5
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.4e-29 133.7 137 50.4
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.8e-29 133.3 134 48.5
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.8e-29 133.3 105 61.0
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.4e-29 132.9 124 49.2
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 3.1e-29 132.5 161 42.2
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.1e-29 132.1 129 49.6
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 7.0e-29 131.3 159 47.8
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 7.0e-29 131.3 144 47.9
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 9.1e-29 131.0 140 43.6
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.2e-28 130.6 119 52.1
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.5e-28 130.2 141 45.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 2.0e-28 129.8 142 45.1
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.6e-28 129.4 141 44.7
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 3.5e-28 129.0 134 51.5
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.5e-28 129.0 111 53.2
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 5.9e-28 128.3 130 47.7
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.0e-27 127.5 163 46.0
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.0e-27 127.5 186 43.5
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 5.0e-27 125.2 126 50.0
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.5e-26 122.9 144 47.2
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 3.2e-26 122.5 127 49.6
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 3.2e-26 122.5 154 42.9
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 4.2e-26 122.1 145 46.9
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 5.5e-26 121.7 101 57.4
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.6e-25 120.2 156 43.6
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 3.6e-25 119.0 160 36.9
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 3.6e-25 119.0 141 44.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 4.7e-25 118.6 142 43.7
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 6.1e-25 118.2 142 42.3
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 8.0e-25 117.9 101 52.5
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 1.0e-24 117.5 91 53.8
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.0e-23 113.2 151 42.4
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.7e-23 111.7 123 49.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.7e-23 111.7 123 49.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 9.7e-23 110.9 135 40.7
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.7e-22 110.2 123 48.8
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.2e-22 109.8 132 41.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.4e-21 107.1 145 38.6
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.1e-21 105.5 134 40.3
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.3e-21 105.1 76 64.5
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 3.5e-20 102.4 124 43.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.5e-18 96.3 98 48.0
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 6.1e-17 91.7 80 50.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.0e-16 90.9 115 38.3
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.4e-16 90.5 102 45.1
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.8e-16 90.1 92 47.8
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.8e-16 90.1 113 44.2
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 5.2e-16 88.6 148 40.5
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 8.8e-16 87.8 147 35.4
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.2e-15 87.4 134 41.8
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-15 86.7 144 36.8
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.0e-15 86.7 162 42.6
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.7e-15 85.1 102 43.1
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.7e-14 83.6 218 31.2
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 8.3e-14 81.3 163 32.5
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.2e-12 77.4 139 38.1
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 1.0e-08 64.3 123 32.5
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 6.8e-08 61.6 96 34.4
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.2e-07 60.8 95 36.8


User provided reference genes

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