Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 4.1e-173 611.3 313 100.0
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.0e-99 367.5 287 62.4
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.3e-99 366.3 289 63.3
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.0e-99 365.9 287 61.0
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 8.8e-99 364.4 302 60.3
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.0e-98 363.2 287 60.3
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.0e-94 350.9 284 61.3
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.3e-94 350.5 289 59.5
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.7e-94 350.1 302 58.6
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 3.8e-94 349.0 286 58.4
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.8e-94 349.0 289 61.6
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 5.0e-94 348.6 287 59.6
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 8.6e-94 347.8 289 58.8
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 8.6e-94 347.8 290 59.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 8.6e-94 347.8 283 58.7
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.5e-93 347.1 287 60.6
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 1.9e-93 346.7 291 59.5
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.2e-92 344.0 287 58.9
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.6e-92 343.6 294 58.2
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.6e-92 342.4 287 58.9
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.7e-92 342.0 287 58.5
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 5.2e-91 338.6 287 58.9
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 5.2e-91 338.6 282 59.9
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 6.8e-91 338.2 287 58.9
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 8.9e-91 337.8 270 60.4
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.2e-90 337.4 288 58.7
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.5e-90 337.0 286 58.4
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 4.4e-90 335.5 288 58.3
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 7.5e-90 334.7 311 55.6
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 7.5e-90 334.7 295 56.6
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 7.5e-90 334.7 290 57.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 1.3e-89 334.0 295 57.3
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 3.7e-89 332.4 287 56.1
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 3.7e-89 332.4 315 54.9
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 6.3e-89 331.6 288 54.9
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.3e-89 331.6 284 58.1
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 8.3e-89 331.3 303 56.1
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.4e-88 330.5 315 54.3
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.4e-88 330.5 315 54.3
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.4e-88 330.5 289 56.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.8e-88 330.1 295 56.3
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 3.1e-88 329.3 290 59.3
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 4.1e-88 328.9 295 56.9
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.1e-88 328.9 289 56.4
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 5.4e-88 328.6 288 57.3
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 9.2e-88 327.8 296 56.1
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 1.6e-87 327.0 288 57.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.7e-87 326.2 282 58.5
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 7.8e-87 324.7 284 57.0
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 5.0e-86 322.0 286 55.2
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.5e-85 320.5 286 57.3
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 7.3e-85 318.2 286 55.9
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.2e-84 317.4 299 54.5
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 2.1e-84 316.6 325 52.0
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 2.1e-84 316.6 289 56.4
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.6e-84 315.8 289 56.1
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 3.6e-84 315.8 285 55.1
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.6e-84 315.8 289 54.7
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 4.7e-84 315.5 267 57.7
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 6.1e-84 315.1 288 56.2
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 6.1e-84 315.1 289 54.3
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 6.1e-84 315.1 283 54.8
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.4e-83 313.9 285 55.4
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.8e-83 313.5 282 57.8
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.8e-83 313.5 285 54.4
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 2.3e-83 313.2 288 56.2
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 2.0e-82 310.1 289 54.3
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.6e-82 309.7 281 53.7
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.8e-82 308.5 288 55.6
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 5.8e-82 308.5 286 54.9
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 9.8e-82 307.8 292 55.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.7e-81 305.8 286 54.2
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 4.9e-81 305.4 285 55.4
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.1e-80 304.3 293 54.6
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.9e-80 303.5 281 53.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.4e-80 303.1 283 55.5
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.2e-80 302.8 292 52.7
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 5.4e-80 302.0 299 53.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 9.2e-80 301.2 264 57.2
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.2e-79 300.8 281 51.6
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 3.5e-79 299.3 286 53.5
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 4.6e-79 298.9 301 52.8
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 7.8e-79 298.1 263 56.7
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.0e-78 297.7 288 53.8
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.5e-77 293.9 282 52.8
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.5e-77 293.9 282 52.8
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 4.4e-74 282.3 287 52.3
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 4.4e-74 282.3 290 50.3
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.7e-73 280.4 294 50.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 3.5e-71 272.7 285 48.1
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.3e-70 270.8 289 49.1
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 4.3e-69 265.8 236 58.1
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.6e-68 263.8 286 47.9
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 7.1e-64 248.4 285 46.0
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.7e-63 246.5 283 47.0
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.7e-63 246.5 291 47.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.5e-63 246.1 285 46.0
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 4.6e-63 245.7 231 55.8
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 2.8e-60 236.5 312 42.3
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 1.5e-58 230.7 234 52.6
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.0e-46 191.4 206 52.9
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.1e-45 188.0 289 41.9
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.5e-45 187.6 214 44.9
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 9.6e-45 184.9 290 42.1
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 2.1e-44 183.7 289 41.5
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 6.2e-44 182.2 168 55.4
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.1e-43 181.4 207 49.3
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.5e-42 177.6 293 39.2
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 5.8e-42 175.6 288 37.5
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 2.2e-41 173.7 165 54.5
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.7e-39 166.8 285 37.5
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 4.6e-39 166.0 166 53.6
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 2.3e-38 163.7 276 35.5
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.3e-38 163.7 160 51.2
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 3.3e-37 159.8 112 65.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.6e-36 157.5 116 64.7
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.2e-33 147.1 105 62.9
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-32 144.4 166 45.2
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.1e-29 134.8 148 45.9
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.1e-27 128.3 157 46.5
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 2.4e-27 127.1 131 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.6e-20 104.4 154 38.3
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.2e-20 104.0 108 47.2
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 3.7e-20 103.2 94 52.1
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.2e-16 89.7 67 58.2
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 2.1e-15 87.4 53 71.7
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 4.6e-15 86.3 67 58.2
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.9e-14 83.2 67 58.2
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 6.7e-14 82.4 63 58.7
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 8.8e-14 82.0 68 55.9
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 9.7e-13 78.6 50 60.0
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 2.2e-12 77.4 48 64.6
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 6.9e-11 72.4 132 31.8
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-08 64.7 73 43.8
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 7.2e-08 62.4 50 54.0


User provided reference genes

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