Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021991 Vanilla planifolia HOM05D003380 ORTHO05D004232 6.4e-73 277.3 141 100.0
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 3.9e-14 82.0 50 82.0
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 3.9e-14 82.0 50 82.0
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 3.9e-14 82.0 51 80.4
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 3.9e-14 82.0 50 82.0
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 3.9e-14 82.0 50 82.0
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 3.9e-14 82.0 50 82.0
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 5.2e-14 81.6 49 83.7
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.2e-14 81.6 50 80.0
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.2e-14 81.6 50 80.0
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 6.7e-14 81.3 62 71.0
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 6.7e-14 81.3 62 71.0
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 6.7e-14 81.3 53 79.2
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 6.7e-14 81.3 50 82.0
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 8.8e-14 80.9 50 82.0
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 8.8e-14 80.9 50 82.0
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 1.1e-13 80.5 59 69.5
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.1e-13 80.5 63 65.1
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.1e-13 80.5 63 65.1
TAR636G3035 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 1.1e-13 80.5 50 80.0
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 1.1e-13 80.5 59 71.2
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 1.5e-13 80.1 50 80.0
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 1.5e-13 80.1 63 65.1
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.5e-13 80.1 63 65.1
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 1.5e-13 80.1 59 67.8
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 2.0e-13 79.7 50 80.0
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 2.0e-13 79.7 52 78.8
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 2.0e-13 79.7 50 78.0
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 59 69.5
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 2.6e-13 79.3 49 81.6
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 2.6e-13 79.3 50 80.0
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 2.6e-13 79.3 50 80.0
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 2.6e-13 79.3 50 78.0
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 2.6e-13 79.3 63 65.1
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 3.3e-13 79.0 50 78.0
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 3.3e-13 79.0 50 78.0
DCAR_000674 Daucus carota HOM05D003380 ORTHO05D004232 3.3e-13 79.0 50 78.0
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 3.3e-13 79.0 50 78.0
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 3.3e-13 79.0 50 78.0
Lj6A275T62 Lonicera japonica HOM05D003380 ORTHO05D004232 3.3e-13 79.0 68 64.7
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 4.4e-13 78.6 63 65.1
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 80.0
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 80.0
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 80.0
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 80.0
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 80.0
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 78.0
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 4.4e-13 78.6 50 76.0
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 4.4e-13 78.6 63 65.1
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 5.7e-13 78.2 63 63.5
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 5.7e-13 78.2 52 76.9
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 5.7e-13 78.2 50 78.0
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 5.7e-13 78.2 50 78.0
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 7.4e-13 77.8 63 65.1
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 7.4e-13 77.8 50 76.0
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 7.4e-13 77.8 63 63.5
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 7.4e-13 77.8 52 76.9
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 7.4e-13 77.8 52 76.9
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 7.4e-13 77.8 49 79.6
Actinidia31878 Actinidia chinensis HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 76.0
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 9.7e-13 77.4 52 76.9
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 78.0
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 9.7e-13 77.4 50 76.0
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 9.7e-13 77.4 62 66.1
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 1.3e-12 77.0 63 63.5
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 1.3e-12 77.0 49 79.6
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 1.3e-12 77.0 50 76.0
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 1.3e-12 77.0 49 79.6
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 1.3e-12 77.0 49 79.6
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.3e-12 77.0 50 78.0
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.3e-12 77.0 50 78.0
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.3e-12 77.0 49 79.6
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.3e-12 77.0 49 79.6
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.3e-12 77.0 52 75.0
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 1.3e-12 77.0 50 76.0
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 1.3e-12 77.0 52 75.0
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 1.3e-12 77.0 52 75.0
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 1.3e-12 77.0 50 78.0
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 1.7e-12 76.6 50 76.0
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 1.7e-12 76.6 49 77.6
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 1.7e-12 76.6 49 77.6
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 1.7e-12 76.6 52 75.0
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 1.7e-12 76.6 52 75.0
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 1.7e-12 76.6 50 76.0
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 1.7e-12 76.6 50 76.0
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 1.7e-12 76.6 49 77.6
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 1.7e-12 76.6 49 79.6
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 1.7e-12 76.6 49 79.6
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 2.2e-12 76.3 63 60.3
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 2.2e-12 76.3 62 67.7
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 2.2e-12 76.3 50 76.0
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 2.2e-12 76.3 50 76.0
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 2.2e-12 76.3 49 77.6
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 2.8e-12 75.9 62 64.5
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 2.8e-12 75.9 49 77.6
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 2.8e-12 75.9 49 77.6
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 2.8e-12 75.9 56 67.9
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 2.8e-12 75.9 56 67.9
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 3.7e-12 75.5 49 77.6
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 3.7e-12 75.5 90 52.2
Atru.chr1.909 Acer truncatum HOM05D003380 ORTHO05D004232 4.8e-12 75.1 76 55.3
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.3e-12 74.7 59 64.4
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.3e-12 74.7 59 64.4
Hma1.2p1_0263F.1_g105450 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 6.3e-12 74.7 58 63.8
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 6.3e-12 74.7 50 74.0
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 1.1e-11 73.9 62 62.9
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 1.1e-11 73.9 49 75.5
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 3.1e-11 72.4 50 70.0
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 4.1e-11 72.0 59 62.7
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 5.3e-11 71.6 72 56.9
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 1.6e-10 70.1 46 76.1
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 3.5e-10 68.9 49 71.4
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 3.5e-10 68.9 49 71.4
Haze_23530 Corylus avellana HOM05D003380 ORTHO05D004232 3.8e-09 65.5 41 78.0
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 3.8e-09 65.5 52 63.5
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 3.8e-09 65.5 49 67.3
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 3.8e-09 65.5 49 67.3
CDE04G3274 Ceratophyllum demersum HOM05D003380 ORTHO05D004232 3.2e-08 62.4 50 70.0
BcaNung01533 Brassica carinata HOM05D003380 ORTHO05D004232 2.1e-07 59.7 49 63.3
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 3.0e-06 55.8 95 41.1


User provided reference genes

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