Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 2091.2 1053 100.0
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1322.0 1123 61.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1293.5 1134 58.9
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1286.2 1149 58.4
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1278.8 1122 58.6
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1273.8 1116 58.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1260.7 1122 58.2
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1124 58.1
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1126 56.8
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1125 56.7
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 1127 56.8
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1218.0 1134 55.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1202.6 1124 56.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1202 53.6
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1195.6 1122 55.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1193.7 1124 55.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1186.8 1120 55.4
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1182.2 1113 55.4
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1180.2 1119 56.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1178.7 1190 52.9
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1176.0 1119 55.1
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1172.1 1122 54.5
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1172.1 1162 54.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1170.6 1146 53.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1170.6 1119 55.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1170.2 1129 55.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1169.5 1125 56.0
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1167.9 1127 54.2
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1161.4 1124 54.7
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1158.3 1124 53.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1156.0 1124 53.9
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1156.0 1130 55.2
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1154.8 1120 55.5
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1154.8 1120 54.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1154.4 1122 54.6
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1151.7 1120 55.5
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1150.2 1076 57.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1148.7 1126 54.4
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1147.9 1122 53.6
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1147.5 1118 54.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1147.5 1191 52.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1143.6 1125 53.9
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1136.7 1136 52.5
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1134.4 1122 52.9
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1134.4 1108 54.0
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1133.6 1132 54.5
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1130.5 1126 54.5
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1129.8 1120 53.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1127.9 1121 53.5
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1122.5 1123 52.8
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1120.1 1117 53.0
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1119.0 1118 52.4
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1117.8 1130 52.8
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1114.8 1116 52.8
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1112.4 1123 53.3
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1112.4 1145 52.7
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1111.7 1135 51.9
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1108.6 1137 52.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1108.2 1134 53.4
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1107.8 1133 52.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1104.7 1123 52.1
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1103.2 1119 52.3
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1101.7 1135 52.6
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1096.3 1124 52.9
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1092.8 1123 52.7
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1090.9 1132 50.5
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1088.9 1094 53.1
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1086.6 1132 50.4
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1084.7 1094 53.9
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1083.2 1187 49.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1080.9 1095 53.3
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1080.1 1094 53.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1077.4 1092 53.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1077.0 920 60.0
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1076.2 1099 53.1
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 1103 53.3
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 1103 53.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 1092 53.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 1124 51.8
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 7.2e-312 1074.3 1124 51.5
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 3.6e-311 1071.6 1095 53.3
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 5.0e-311 1071.2 1104 52.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 7.1e-310 1067.4 1092 53.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 2.1e-306 1055.8 1087 53.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 2.0e-304 1049.3 1093 52.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 7.6e-304 1047.3 1091 52.2
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 1.0e-303 1047.0 1118 51.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 1.3e-303 1046.6 1186 48.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 2.5e-302 1042.3 1170 50.0
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 7.1e-302 1040.8 1120 51.4
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 3.9e-300 1035.0 1128 49.7
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 5.1e-300 1034.6 1118 51.5
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.1e-299 1033.5 1119 51.2
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 1.0e-295 1020.4 1010 55.3
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.3e-295 1020.0 1125 50.7
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 2.5e-294 1015.8 959 55.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 3.2e-294 1015.4 1110 51.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.1e-289 1000.3 1030 52.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 6.9e-289 997.7 960 54.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 1.4e-286 989.9 1173 48.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 2.7e-285 985.7 1011 51.9
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 8.8e-276 954.1 966 54.1
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 9.1e-273 944.1 956 53.8
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 4.2e-270 935.3 846 56.9
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.1e-267 927.2 1162 46.0
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 7.4e-267 924.5 966 51.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.2e-266 922.9 798 58.9
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.8e-258 896.0 907 51.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.1e-257 894.0 645 69.3
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.7e-250 869.0 675 63.3
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 5.8e-235 818.5 1137 42.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.5e-235 818.1 1007 45.4
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 7.5e-235 818.1 815 53.1
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.5e-227 793.9 1155 41.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 7.3e-214 748.4 1108 40.4
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 3.8e-210 736.1 805 48.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 8.5e-170 602.1 1046 37.8
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.9e-162 577.0 985 37.2
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-148 531.6 1067 35.1
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.6e-144 518.1 451 59.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.8e-140 504.6 451 57.2
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.8e-126 455.7 540 47.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.8e-94 350.1 254 63.8
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 7.6e-94 349.7 1574 25.0
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.2e-92 344.4 321 56.1
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.1e-73 282.7 378 44.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-66 258.1 233 57.5
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.7e-61 242.3 521 32.1
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.8e-61 241.1 263 51.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.5e-61 240.0 260 52.3
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.5e-60 238.4 381 39.1
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-57 228.8 231 51.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.5e-53 213.4 249 49.4
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.2e-52 210.3 263 47.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 4.1e-47 194.5 384 34.6
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 7.7e-46 190.3 209 48.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-37 162.5 266 41.0
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.1e-36 159.8 144 56.2
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 7.0e-31 140.6 224 40.6
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.1e-31 140.2 224 40.6
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 3.5e-30 138.3 355 30.4
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.5e-28 132.1 224 39.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.0e-27 127.1 142 48.6
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.0e-27 127.1 142 48.6
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.0e-27 127.1 142 48.6
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.0e-27 127.1 142 48.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.2e-26 124.4 142 47.9
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-24 119.8 140 47.1
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.6e-22 112.8 180 35.6
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.1e-19 102.4 103 52.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.6e-19 101.7 302 27.8
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 3.0e-18 98.6 96 52.1
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.3e-16 93.2 55 78.2
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.7e-16 92.8 131 43.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.1e-15 90.1 68 57.4
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.1e-12 80.1 58 60.3
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.5e-12 77.0 76 55.3


User provided reference genes

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