Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.1e-184 649.8 331 100.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 4.8e-119 431.8 330 66.7
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.1e-118 429.1 323 66.6
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 8.4e-116 421.0 323 64.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 8.4e-116 421.0 323 65.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 7.1e-115 417.9 323 63.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.2e-114 417.2 323 63.8
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.7e-114 416.0 323 62.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.5e-114 415.6 324 64.2
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.9e-114 414.5 325 64.3
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.8e-113 413.3 323 62.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.9e-113 412.1 323 63.8
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.1e-113 411.8 323 64.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 6.7e-113 411.4 319 65.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 6.7e-113 411.4 323 63.2
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 8.7e-113 411.0 323 63.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 8.7e-113 411.0 328 62.5
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.1e-112 410.6 322 63.0
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.5e-112 409.5 323 63.2
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.5e-112 409.5 323 62.2
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.3e-112 409.1 325 63.1
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 5.6e-112 408.3 324 63.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.6e-112 407.5 325 64.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 9.6e-112 407.5 324 61.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.3e-111 407.1 323 63.2
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.6e-111 406.8 323 63.2
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.6e-111 406.8 325 63.1
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.1e-111 406.4 325 63.4
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.7e-111 405.6 323 61.6
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 8.1e-111 404.4 323 62.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-110 404.1 323 62.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.1e-110 404.1 325 63.1
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.8e-110 403.3 325 60.9
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 9.0e-110 401.0 317 63.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.0e-110 401.0 322 62.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.2e-109 400.6 323 62.2
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.2e-109 400.6 325 61.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-109 400.6 323 62.5
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.5e-109 400.2 334 60.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.6e-109 399.4 325 61.8
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-109 399.4 325 61.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 4.5e-109 398.7 323 62.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 4.5e-109 398.7 328 61.6
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.5e-109 398.7 321 62.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.5e-109 398.7 323 61.3
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 7.6e-109 397.9 324 62.0
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 7.6e-109 397.9 323 62.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.3e-108 397.1 323 61.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.2e-108 396.4 323 61.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.2e-108 396.4 325 62.5
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.9e-108 396.0 320 62.8
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 4.9e-108 395.2 323 61.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 6.5e-108 394.8 323 61.9
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.1e-107 394.0 323 62.2
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.1e-107 394.0 326 61.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-107 393.7 323 61.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.9e-107 393.3 320 60.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.9e-107 393.3 324 61.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 4.2e-107 392.1 323 61.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 9.3e-107 391.0 323 62.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 9.3e-107 391.0 324 59.9
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.2e-106 390.6 323 60.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.6e-106 390.2 323 61.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.5e-106 389.0 305 65.9
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 4.6e-106 388.7 323 61.0
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.3e-105 387.1 323 61.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.3e-105 387.1 325 59.7
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.3e-105 387.1 330 61.2
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.3e-105 386.3 321 60.4
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 3.9e-105 385.6 319 61.4
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.3e-104 382.5 321 60.1
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.3e-104 382.1 322 59.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 4.3e-104 382.1 323 60.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-103 380.6 323 59.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.3e-103 380.6 322 60.2
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.6e-103 380.2 323 59.8
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.1e-103 379.8 321 59.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.7e-103 379.0 324 60.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.4e-102 376.3 323 59.8
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.4e-102 376.3 325 59.1
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.1e-102 375.6 324 58.3
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 6.9e-102 374.8 324 58.0
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 6.9e-102 374.8 323 58.8
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 9.0e-102 374.4 324 58.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-101 373.6 306 60.8
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.0e-101 373.2 323 59.1
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.6e-101 372.9 324 58.3
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.4e-101 372.5 324 58.0
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 4.5e-101 372.1 324 57.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.0e-100 370.9 324 58.0
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.2e-100 369.8 323 57.9
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.9e-100 369.4 323 57.9
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.9e-99 366.7 304 60.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 5.5e-99 365.2 324 56.5
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 7.2e-99 364.8 324 57.4
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 7.2e-99 364.8 324 57.4
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 9.3e-99 364.4 324 57.1
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-98 364.0 370 53.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.6e-98 362.1 279 65.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.9e-97 359.0 325 56.6
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 8.7e-97 357.8 324 56.2
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 5.7e-96 355.1 326 57.7
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.7e-95 352.4 287 62.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 4.1e-94 349.0 322 54.7
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 7.7e-93 344.7 294 59.5
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.3e-92 344.0 265 64.2
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.7e-90 336.3 414 47.8
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.0e-89 334.3 374 50.5
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.8e-89 333.6 251 66.9
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 3.9e-89 332.4 322 55.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.0e-88 330.1 323 52.9
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 7.4e-88 328.2 325 53.2
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.2e-84 316.6 541 37.2
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.0e-84 315.5 324 52.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.5e-84 314.7 324 52.2
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.5e-83 313.2 282 58.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.2e-82 310.8 324 52.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.9e-82 308.1 323 52.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-80 303.1 288 55.6
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 5.3e-78 295.4 259 57.5
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.3e-78 295.4 311 48.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.1e-75 287.7 228 61.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.5e-75 286.6 305 49.5
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.1e-74 282.0 312 47.1
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.2e-73 278.9 263 58.2
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.4e-72 275.8 222 63.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.2e-71 273.5 685 30.7
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.4e-70 270.8 221 61.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.2e-69 267.7 206 66.0
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.7e-63 247.3 308 44.8
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.2e-56 224.6 177 62.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.4e-49 201.1 297 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 9.2e-38 161.8 198 43.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.1e-25 121.7 75 72.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-25 121.3 95 64.2
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.3e-25 120.6 95 64.2
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 5.8e-24 115.9 97 57.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.3e-23 114.8 99 54.5
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.2e-22 110.2 87 62.1
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 3.5e-21 106.7 99 53.5
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.3e-19 100.1 123 46.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.6e-18 97.8 325 28.3
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.6e-16 90.5 82 52.4
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 5.6e-11 72.8 88 43.2
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.5e-08 64.7 80 42.5
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 7.6e-08 62.4 71 46.5


User provided reference genes

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