Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.3e-75 286.2 134 100.0
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.2e-74 281.6 134 97.8
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.4e-24 116.7 107 54.2
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 4.0e-24 115.2 93 51.6
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 5.2e-24 114.8 95 50.5
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.2e-23 113.6 129 42.6
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.0e-23 112.8 129 41.9
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.0e-23 112.8 129 43.4
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 3.4e-23 112.1 93 53.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 7.5e-23 110.9 106 46.2
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 9.8e-23 110.5 105 47.6
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 9.8e-23 110.5 95 50.5
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.7e-22 109.8 130 43.1
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.2e-22 109.4 93 50.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 2.2e-22 109.4 95 48.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.9e-22 109.0 95 50.5
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 3.7e-22 108.6 95 49.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.7e-22 108.6 105 44.8
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.7e-22 108.6 93 49.5
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 3.7e-22 108.6 92 48.9
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.7e-22 108.6 94 50.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.7e-22 108.6 130 38.5
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.4e-22 107.8 96 50.0
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 6.4e-22 107.8 93 48.4
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 8.3e-22 107.5 95 49.5
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.1e-21 107.1 97 47.4
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.4e-21 106.7 93 47.3
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 1.9e-21 106.3 96 50.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.9e-21 106.3 97 48.5
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.4e-21 105.9 95 45.3
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 3.2e-21 105.5 96 43.8
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.2e-21 105.5 95 45.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 3.2e-21 105.5 127 40.9
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 4.1e-21 105.1 89 52.8
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.1e-21 105.1 99 47.5
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.1e-21 105.1 93 46.2
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 4.1e-21 105.1 110 48.2
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.4e-21 104.8 95 46.3
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.4e-21 104.8 92 46.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.4e-21 104.8 106 43.4
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 5.4e-21 104.8 95 49.5
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.4e-21 104.8 95 49.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 5.4e-21 104.8 95 46.3
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 5.4e-21 104.8 99 46.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 5.4e-21 104.8 95 48.4
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 48.4
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 48.4
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 7.1e-21 104.4 134 38.8
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 46.3
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 46.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.1e-21 104.4 121 43.8
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 47.4
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 7.1e-21 104.4 95 47.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 9.2e-21 104.0 108 44.4
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 9.2e-21 104.0 95 46.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 9.2e-21 104.0 107 43.9
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.2e-20 103.6 94 47.9
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.2e-20 103.6 120 41.7
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.2e-20 103.6 89 49.4
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.2e-20 103.6 95 48.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.2e-20 103.6 123 42.3
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.2e-20 103.6 95 46.3
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 1.6e-20 103.2 120 39.2
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.6e-20 103.2 130 39.2
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 2.1e-20 102.8 95 48.4
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 2.1e-20 102.8 92 50.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.7e-20 102.4 94 47.9
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.7e-20 102.4 117 43.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.5e-20 102.1 96 40.6
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 3.5e-20 102.1 96 40.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 3.5e-20 102.1 95 45.3
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 3.5e-20 102.1 95 47.4
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 4.6e-20 101.7 94 44.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.6e-20 101.7 88 50.0
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 6.0e-20 101.3 94 43.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 6.0e-20 101.3 82 53.7
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 7.8e-20 100.9 114 43.0
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.0e-19 100.5 88 45.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.3e-19 100.1 118 44.1
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.3e-19 100.1 96 41.7
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 1.3e-19 100.1 105 41.0
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-19 100.1 95 45.3
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.3e-19 100.1 94 43.6
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.3e-19 100.1 107 49.5
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.3e-19 99.4 121 39.7
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.3e-19 99.4 93 43.0
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.0e-19 99.0 93 46.2
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.0e-19 99.0 95 44.2
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.9e-19 98.6 97 44.3
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.9e-19 98.6 96 40.6
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.9e-19 98.6 93 48.4
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.9e-19 98.6 125 41.6
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.9e-19 98.6 96 41.7
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 3.9e-19 98.6 93 45.2
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 8.6e-19 97.4 91 49.5
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 8.6e-19 97.4 111 42.3
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-18 97.1 94 42.6
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.1e-18 97.1 93 46.2
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.1e-18 97.1 94 46.8
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.5e-18 96.7 111 41.4
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.5e-18 96.7 94 42.6
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.5e-18 96.7 93 49.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.5e-18 96.7 95 46.3
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.9e-18 96.3 95 46.3
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.5e-18 95.9 95 44.2
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 3.3e-18 95.5 127 40.2
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.3e-18 95.5 96 47.9
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.3e-18 95.1 111 41.4
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 4.3e-18 95.1 94 44.7
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.3e-18 95.1 110 41.8
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.6e-18 94.7 128 37.5
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 5.6e-18 94.7 111 41.4
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.5e-18 94.0 124 40.3
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 9.5e-18 94.0 96 44.8
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.2e-17 93.6 96 38.5
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.6e-17 93.2 92 39.1
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 1.6e-17 93.2 92 42.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.6e-17 93.2 127 38.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 2.1e-17 92.8 95 40.0
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 2.1e-17 92.8 96 38.5
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.1e-17 92.8 96 38.5
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.1e-17 92.8 96 38.5
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.1e-17 92.8 96 38.5
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.1e-17 92.8 96 38.5
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.1e-17 92.8 94 42.6
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.8e-17 92.4 98 45.9
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.6e-17 92.0 111 40.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 4.7e-17 91.7 93 45.2
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.2e-17 91.3 111 41.4
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.2e-17 91.3 95 43.2
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 6.2e-17 91.3 99 42.4
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.1e-16 90.5 99 38.4
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.4e-16 90.1 102 42.2
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.4e-16 90.1 102 41.2
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.4e-16 90.1 102 41.2
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.4e-16 90.1 102 41.2
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.4e-16 90.1 102 41.2
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.4e-16 90.1 111 40.5
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 1.8e-16 89.7 93 44.1
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.8e-16 89.7 110 38.2
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.3e-16 89.4 129 34.9
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.3e-16 89.4 111 39.6
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 3.1e-16 89.0 108 40.7
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.1e-16 89.0 102 41.2
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 3.1e-16 89.0 94 38.3
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.0e-16 88.6 91 41.8
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 5.2e-16 88.2 88 43.2
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 6.8e-16 87.8 134 36.6
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.2e-15 87.0 95 43.2
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.2e-15 87.0 88 42.0
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-15 86.7 125 38.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.5e-15 86.7 95 43.2
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.5e-15 86.7 95 43.2
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 2.0e-15 86.3 100 43.0
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.0e-15 86.3 95 41.1
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 2.0e-15 86.3 72 48.6
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 2.6e-15 85.9 92 39.1
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.4e-15 85.5 89 41.6
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.4e-15 85.5 93 40.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.7e-14 83.2 99 42.4
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 1.7e-14 83.2 89 40.4
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 2.2e-14 82.8 100 38.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.7e-14 82.0 94 36.2
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 6.4e-14 81.3 96 40.6
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 9.2e-13 77.4 98 36.7
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.2e-12 77.0 97 36.1
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.0e-11 73.9 60 51.7
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 2.3e-11 72.8 53 56.6
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.2e-09 67.0 60 50.0
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 2.4e-08 62.8 84 32.1
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.2e-07 60.5 46 54.3
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 2.2e-06 56.2 71 38.0
MBI15_g32296_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 6.4e-06 54.7 71 36.6


User provided reference genes

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