Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.5e-276 953.0 457 100.0
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.6e-178 629.8 438 68.3
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.8e-178 629.0 455 66.8
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 4.8e-178 628.2 453 67.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 4.1e-177 625.2 453 67.1
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.5e-176 623.2 452 67.0
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.6e-176 622.5 453 66.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.5e-176 621.7 406 71.4
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 7.6e-176 620.9 419 69.5
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.7e-175 619.8 452 65.5
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.2e-175 619.4 452 65.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.9e-175 619.0 375 74.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.8e-175 618.6 452 65.7
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 5.0e-175 618.2 454 66.5
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 6.5e-175 617.8 441 66.7
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 6.5e-175 617.8 449 66.6
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 6.5e-175 617.8 414 70.3
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 6.5e-175 617.8 452 65.5
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.1e-174 617.1 463 65.7
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.1e-174 617.1 419 69.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.4e-174 616.7 441 66.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.4e-174 616.7 456 65.8
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 2.5e-174 615.9 452 65.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 4.2e-174 615.1 453 66.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.2e-174 615.1 453 65.1
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 5.5e-174 614.8 433 67.0
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 7.2e-174 614.4 436 68.1
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 9.3e-174 614.0 384 73.4
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 9.3e-174 614.0 453 64.9
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.2e-173 613.6 453 67.3
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.2e-173 613.6 455 65.3
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.6e-173 613.2 376 75.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.6e-173 613.2 433 68.1
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.1e-173 612.8 452 65.5
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 4.6e-173 611.7 455 66.4
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 7.9e-173 610.9 453 64.7
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.0e-172 610.5 414 69.1
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.3e-172 610.1 458 65.3
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.3e-172 610.1 453 65.1
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.3e-172 609.4 460 64.1
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.3e-172 609.4 452 66.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 2.3e-172 609.4 458 65.3
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.0e-172 609.0 452 65.0
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 3.9e-172 608.6 416 68.0
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 3.9e-172 608.6 453 65.3
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.1e-172 608.2 458 65.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.1e-172 608.2 454 66.3
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 6.7e-172 607.8 380 73.2
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 6.7e-172 607.8 452 64.6
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.7e-172 607.8 459 64.3
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.7e-172 607.4 429 67.8
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.5e-171 606.7 379 74.4
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.5e-171 606.7 455 65.1
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.9e-171 606.3 455 65.9
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.9e-171 606.3 424 67.5
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.5e-171 605.9 457 64.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.5e-171 605.9 449 66.6
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.5e-171 605.9 453 64.5
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 4.3e-171 605.1 354 76.3
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 4.3e-171 605.1 354 76.3
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 5.7e-171 604.7 428 66.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 5.7e-171 604.7 454 65.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.7e-171 604.7 454 66.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.7e-171 604.7 454 65.0
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 7.4e-171 604.4 381 72.7
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 7.4e-171 604.4 455 65.7
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 9.7e-171 604.0 456 64.7
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 9.7e-171 604.0 378 73.5
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 9.7e-171 604.0 418 67.7
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.6e-170 603.2 382 72.5
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-170 603.2 383 73.1
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.6e-170 603.2 383 73.1
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.6e-170 603.2 383 72.8
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.6e-170 603.2 450 64.9
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.2e-170 602.8 458 65.9
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.2e-170 602.8 378 73.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.8e-170 602.4 382 72.3
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.8e-170 602.4 423 66.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.7e-170 602.1 383 72.8
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.8e-170 601.7 455 64.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 6.3e-170 601.3 457 63.9
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 6.3e-170 601.3 382 72.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 6.3e-170 601.3 451 65.9
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.2e-170 600.9 450 64.9
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.1e-169 600.5 382 72.5
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.1e-169 600.5 452 64.2
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.4e-169 600.1 468 63.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.8e-169 599.7 459 64.5
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 4.1e-169 598.6 383 72.3
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.1e-169 598.6 382 72.3
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 6.9e-169 597.8 382 72.0
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.1e-169 597.4 378 73.3
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.5e-168 596.7 381 71.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.6e-168 595.9 385 71.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.6e-168 595.9 421 67.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 5.9e-168 594.7 447 65.3
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.9e-168 594.7 452 65.3
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 5.9e-168 594.7 435 65.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 7.7e-168 594.3 450 64.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 7.7e-168 594.3 440 65.2
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.3e-167 593.6 429 65.0
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 5.0e-167 591.7 448 63.8
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.1e-166 590.5 429 64.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.9e-166 589.7 446 64.8
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.2e-166 589.0 420 65.5
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 4.2e-166 588.6 450 62.7
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.2e-165 587.0 531 58.0
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.2e-165 587.0 457 65.0
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.2e-165 587.0 488 61.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 8.8e-164 580.9 417 66.7
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.4e-160 568.9 453 62.0
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 5.9e-160 568.2 452 63.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.4e-158 563.5 322 78.3
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.6e-157 560.1 321 76.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 3.6e-157 558.9 322 78.3
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 5.2e-156 555.1 417 65.0
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.5e-155 553.5 353 70.0
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 5.7e-155 551.6 453 61.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.8e-154 549.3 339 74.0
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 7.0e-153 544.7 309 78.3
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 8.5e-151 537.7 454 60.4
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.1e-150 537.3 422 63.0
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.5e-143 511.5 288 78.5
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.5e-143 511.1 288 78.5
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-141 507.3 334 65.9
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.6e-141 505.8 288 77.8
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.1e-137 494.2 285 77.2
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 8.3e-130 468.0 265 80.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 5.2e-124 448.7 359 62.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.6e-120 437.2 330 57.0
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.8e-116 423.7 285 66.7
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.0e-115 420.2 374 58.3
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 2.6e-107 393.3 320 62.2
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.7e-106 389.4 339 51.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.0e-103 381.3 242 71.5
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.4e-100 370.2 289 61.2
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 6.2e-93 345.5 320 51.2
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.4e-90 335.1 285 58.9
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.6e-86 322.4 332 46.4
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.8e-60 237.7 136 78.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.5e-58 228.8 186 58.1
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.2e-50 204.1 121 75.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 5.5e-49 199.5 121 72.7
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.1e-48 197.6 109 78.9
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-46 191.8 136 65.4
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 3.2e-41 173.7 127 65.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.5e-30 136.0 85 71.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.2e-29 134.4 85 70.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.5e-25 120.9 78 65.4
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.6e-24 117.1 101 56.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.7e-10 71.6 52 61.5


User provided reference genes

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