Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 6.5e-234 813.9 486 100.0
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.2e-83 314.7 372 50.8
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 6.8e-82 308.9 364 50.5
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.5e-81 307.8 368 50.5
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 9.9e-81 305.1 375 50.4
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.2e-80 303.9 369 50.9
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 3.8e-80 303.1 366 56.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 3.8e-80 303.1 368 54.1
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 4.9e-80 302.8 367 55.0
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 4.9e-80 302.8 369 50.7
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.1e-79 301.6 364 54.1
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.1e-79 301.6 358 50.6
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.9e-79 300.8 371 58.2
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 7.1e-79 298.9 364 48.9
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 7.1e-79 298.9 374 56.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.2e-78 298.1 366 54.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.6e-78 297.7 380 49.2
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 2.1e-78 297.4 357 55.5
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.7e-78 297.0 363 48.5
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.7e-78 297.0 363 48.2
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 2.7e-78 297.0 364 54.4
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 2.7e-78 297.0 365 55.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 4.6e-78 296.2 363 57.6
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 4.6e-78 296.2 372 51.6
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 4.6e-78 296.2 357 53.5
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 7.8e-78 295.4 367 55.0
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 1.3e-77 294.7 367 50.1
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.7e-77 294.3 357 56.0
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 3.0e-77 293.5 363 49.6
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 5.1e-77 292.7 363 49.6
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.1e-76 291.6 367 49.0
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.1e-76 291.6 374 51.9
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.9e-76 290.8 363 57.3
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 3.3e-76 290.0 373 50.4
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 4.3e-76 289.7 373 49.1
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 7.3e-76 288.9 376 53.5
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 7.3e-76 288.9 363 54.8
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.2e-75 288.1 374 50.0
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 2.1e-75 287.3 364 53.6
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.4e-74 284.6 378 47.6
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-74 284.3 380 52.9
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.8e-74 284.3 380 52.9
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.8e-74 284.3 366 57.7
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 1.8e-74 284.3 375 56.3
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.8e-74 284.3 364 56.3
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.8e-74 284.3 369 58.8
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 2.4e-74 283.9 364 54.9
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.1e-74 283.5 376 52.1
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.1e-74 283.5 376 52.1
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 3.1e-74 283.5 355 56.6
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 4.0e-74 283.1 378 52.1
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 4.0e-74 283.1 293 57.0
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 4.0e-74 283.1 378 55.0
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 5.2e-74 282.7 355 56.6
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.2e-74 282.7 378 53.7
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 5.2e-74 282.7 368 49.5
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 6.9e-74 282.3 363 59.5
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 6.9e-74 282.3 365 57.5
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.2e-73 281.6 376 55.1
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.2e-73 281.6 363 55.9
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 1.5e-73 281.2 310 58.4
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.5e-73 281.2 303 61.1
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.6e-73 280.4 368 56.8
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 3.4e-73 280.0 363 56.5
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 4.4e-73 279.6 381 48.6
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 4.4e-73 279.6 366 54.6
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 7.6e-73 278.9 350 56.9
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 7.6e-73 278.9 354 51.4
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 7.6e-73 278.9 362 59.7
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 9.9e-73 278.5 372 55.6
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.7e-72 277.7 364 49.2
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.9e-72 276.9 372 55.6
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.9e-72 276.9 408 43.4
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 3.8e-72 276.6 369 55.6
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 8.4e-72 275.4 303 62.7
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.1e-71 275.0 381 50.9
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.1e-71 275.0 400 50.5
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.9e-71 274.2 351 54.4
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 2.4e-71 273.9 359 51.5
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 4.2e-71 273.1 365 50.4
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 4.2e-71 273.1 379 48.0
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 5.4e-71 272.7 294 60.2
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 9.3e-71 271.9 350 46.9
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 1.2e-70 271.6 386 45.1
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 2.1e-70 270.8 279 63.8
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.7e-70 270.4 365 54.5
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 3.5e-70 270.0 301 62.1
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 3.5e-70 270.0 375 56.3
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 3.5e-70 270.0 301 62.1
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 6.0e-70 269.2 302 55.3
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 2.3e-69 267.3 376 53.7
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.9e-69 266.5 370 55.1
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.9e-69 266.5 362 58.6
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 3.9e-69 266.5 278 52.9
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 5.1e-69 266.2 305 61.6
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 5.1e-69 266.2 379 55.9
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 5.1e-69 266.2 376 54.0
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.7e-69 265.4 362 57.7
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.6e-68 261.9 363 55.1
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.3e-67 261.5 280 58.2
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.6e-67 261.2 299 59.2
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.1e-67 260.8 279 60.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 3.6e-67 260.0 290 61.7
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 6.2e-67 259.2 335 48.7
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 8.1e-67 258.8 366 47.3
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.3e-66 256.1 302 50.3
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 6.9e-66 255.8 379 53.0
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-65 254.6 300 57.7
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 1.7e-64 251.1 292 59.9
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 2.2e-64 250.8 299 50.5
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-64 250.8 292 58.9
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.4e-63 248.1 347 42.9
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.4e-63 246.1 316 57.0
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.3e-63 245.4 293 61.4
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.6e-62 244.6 293 61.4
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 6.0e-62 242.7 351 42.7
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 9.6e-60 235.3 291 46.7
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 2.8e-59 233.8 254 59.1
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.7e-59 233.4 258 52.7
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.7e-56 224.6 365 39.2
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.7e-54 217.2 280 45.7
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.3e-52 209.9 282 43.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.8e-50 204.5 114 82.5
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-48 198.4 326 50.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.1e-47 195.3 262 43.5
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 9.3e-47 192.2 104 85.6
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-45 187.2 313 47.0
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 4.3e-44 183.3 312 54.2
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.5e-41 174.9 381 36.2
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.2e-40 171.0 302 40.7
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 8.5e-32 142.5 320 37.8
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 2.6e-28 131.0 67 89.6
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.1e-26 125.6 260 32.3
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.5e-25 120.2 142 47.9
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 2.7e-22 110.9 139 44.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 8.8e-21 105.9 60 80.0
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 1.3e-19 102.1 283 30.7
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.7e-19 101.7 51 92.2
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.1e-18 97.4 51 88.2
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.3e-18 96.7 63 66.7
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.0e-17 94.7 62 67.7
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.7e-14 83.6 74 50.0
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.0e-13 82.4 47 78.7
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-06 58.9 29 89.7


User provided reference genes

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