Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 3.1e-246 854.7 447 100.0
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 7.8e-141 504.6 450 61.6
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 4.7e-138 495.4 419 64.0
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 1.4e-137 493.8 435 60.9
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.8e-137 493.4 439 60.8
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.8e-137 493.4 439 60.8
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 4.0e-137 492.3 437 62.2
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 2.0e-136 490.0 427 62.5
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 2.6e-136 489.6 450 60.0
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 2.6e-136 489.6 440 60.9
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 7.6e-136 488.0 453 59.4
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 9.9e-136 487.6 414 62.1
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 6.4e-135 485.0 445 60.4
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 6.4e-135 485.0 446 59.4
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 1.4e-134 483.8 439 60.1
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 2.4e-134 483.0 436 59.2
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 3.2e-134 482.6 436 58.9
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 3.5e-133 479.2 420 61.4
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 6.0e-133 478.4 446 59.2
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 7.8e-133 478.0 438 59.6
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 7.8e-133 478.0 436 60.3
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 1.0e-132 477.6 428 60.3
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 1.3e-132 477.2 424 60.1
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 1.3e-132 477.2 439 59.9
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 1.7e-132 476.9 426 59.9
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 3.0e-132 476.1 455 57.6
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 3.0e-132 476.1 451 57.9
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 3.9e-132 475.7 436 59.9
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 3.9e-132 475.7 438 59.6
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 5.1e-132 475.3 451 58.1
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 8.7e-132 474.6 429 59.2
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 1.1e-131 474.2 439 59.7
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 1.9e-131 473.4 436 58.7
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 2.5e-131 473.0 435 59.1
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 3.3e-131 472.6 426 61.0
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 7.3e-131 471.5 430 58.6
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 7.3e-131 471.5 437 57.9
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 7.3e-131 471.5 422 61.1
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 9.6e-131 471.1 434 58.8
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 1.2e-130 470.7 438 59.6
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 3.6e-130 469.2 436 59.2
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 4.7e-130 468.8 425 59.8
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 4.7e-130 468.8 436 59.2
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 4.7e-130 468.8 428 59.1
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 4.7e-130 468.8 436 59.4
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 6.2e-130 468.4 426 58.2
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 8.1e-130 468.0 437 59.0
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 8.1e-130 468.0 436 59.2
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 1.8e-129 466.8 458 57.0
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 2.4e-129 466.5 426 59.6
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 5.3e-129 465.3 436 57.8
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 5.3e-129 465.3 436 58.7
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 5.3e-129 465.3 437 58.8
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 6.9e-129 464.9 461 57.0
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 9.0e-129 464.5 424 58.5
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 9.0e-129 464.5 433 57.5
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 2.0e-128 463.4 435 57.2
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.0e-128 463.4 435 57.2
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.0e-128 463.4 435 57.2
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 7.6e-128 461.5 425 60.2
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 7.6e-128 461.5 441 58.5
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 2.9e-127 459.5 440 57.0
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 3.8e-127 459.1 438 57.3
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 3.8e-127 459.1 438 57.3
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 4.9e-127 458.8 438 57.3
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 4.9e-127 458.8 438 57.3
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 1.1e-126 457.6 438 57.5
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 1.4e-126 457.2 447 57.9
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 1.9e-126 456.8 426 57.7
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 1.9e-126 456.8 480 54.4
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 3.2e-126 456.1 422 58.5
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 4.2e-126 455.7 440 57.5
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 7.1e-126 454.9 437 57.4
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 9.3e-126 454.5 440 56.4
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 9.3e-126 454.5 428 60.0
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 1.2e-125 454.1 440 55.9
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.6e-125 453.8 422 58.3
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 2.7e-125 453.0 455 54.5
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 4.6e-125 452.2 435 56.6
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 1.3e-124 450.7 422 58.1
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 3.9e-124 449.1 440 56.1
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 5.1e-124 448.7 436 56.4
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 4.3e-123 445.7 422 57.6
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 4.3e-123 445.7 422 57.6
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 5.6e-123 445.3 417 57.8
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 9.6e-123 444.5 423 56.7
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.1e-122 443.4 468 55.1
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 1.4e-121 440.7 438 56.2
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 9.0e-121 438.0 436 56.9
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 6.4e-119 431.8 435 56.6
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 7.1e-118 428.3 530 48.5
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 7.1e-118 428.3 489 51.5
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 4.6e-117 425.6 408 58.1
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 3.3e-115 419.5 401 58.1
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 9.6e-115 417.9 468 52.4
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 4.0e-113 412.5 437 55.1
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 2.2e-111 406.8 395 56.5
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 2.9e-111 406.4 400 57.2
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 4.2e-110 402.5 371 60.6
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 3.0e-108 396.4 358 59.5
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 6.7e-108 395.2 405 56.3
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 8.7e-108 394.8 451 51.9
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 1.3e-106 391.0 424 52.8
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 1.6e-106 390.6 375 57.3
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 5.3e-105 385.6 402 54.0
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 4.5e-104 382.5 382 57.6
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 1.3e-103 380.9 323 64.1
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 1.6e-101 374.0 326 62.6
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 2.3e-100 370.2 327 61.8
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 7.4e-99 365.2 331 59.5
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 3.7e-98 362.8 317 60.9
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 3.1e-97 359.8 331 58.6
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 5.9e-96 355.5 334 58.1
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 2.9e-95 353.2 375 55.5
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 2.9e-95 353.2 376 54.3
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 1.4e-92 344.4 414 47.6
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 2.8e-90 336.7 424 47.2
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 2.4e-89 333.6 432 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 1.1e-86 324.7 323 53.3
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 9.7e-83 311.6 430 44.2
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.5e-80 304.3 488 41.4
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 2.6e-80 303.5 377 48.3
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 6.7e-76 288.9 307 55.4
DCAR_014318 Daucus carota HOM05D004665 ORTHO05D006264 1.6e-69 267.7 219 63.5
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 1.3e-66 258.1 354 46.0
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 7.2e-62 242.3 246 57.3
SEGI_40793 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 4.4e-59 233.0 224 56.7
CBR_g40440 Chara braunii HOM05D004665 ORTHO05D006264 1.3e-58 231.5 253 52.2
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 1.7e-58 231.1 338 40.8
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 6.3e-58 229.2 321 42.1
Peaxi162Scf00420g00931 Petunia axillaris HOM05D004665 ORTHO05D006264 2.0e-56 224.2 169 68.0
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 1.5e-51 208.0 313 40.9
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 2.0e-43 181.0 186 51.6
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 6.0e-40 169.5 175 54.9
vmacro18402 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 2.1e-37 161.0 125 67.2
Lsat_1_v5_gn_8_141180 Lactuca sativa HOM05D004665 ORTHO05D006264 1.1e-36 158.7 176 50.6
Aqoxy271s006 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 1.2e-35 155.2 105 75.2
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 3.9e-31 140.2 179 46.4
CDE02G1303 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 8.9e-28 129.0 101 61.4
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 9.9e-27 125.6 229 39.3
Zm00001eb060310 Zea mays HOM05D004665 ORTHO05D006264 3.7e-26 123.6 124 57.3
SEGI_21160 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 8.6e-23 112.5 72 73.6
AL8G18270 Arabidopsis lyrata HOM05D004665 ORTHO05D021400 4.3e-22 110.2 81 63.0
Zm00001eb393410 Zea mays HOM05D004665 ORTHO05D006264 7.3e-22 109.4 136 47.8
CARHR285500 Cardamine hirsuta HOM05D004665 ORTHO05D021400 3.5e-16 90.5 69 68.1
PGSC0003DMG401020232 Solanum tuberosum HOM05D004665 ORTHO05D006264 7.8e-16 89.4 128 43.8
FAN02G3991 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.7e-15 88.2 144 36.8
Lsat_1_v5_gn_8_91301 Lactuca sativa HOM05D004665 ORTHO05D006264 5.1e-15 86.7 92 50.0
Hma1.2p1_0040F.1_g025010 Hydrangea macrophylla HOM05D004665 ORTHO05D021400 7.6e-11 72.8 60 60.0
MD07G1060100 Malus domestica HOM05D004665 ORTHO05D245320 1.7e-10 71.6 90 47.8
Prupe.1G163100 Prunus persica HOM05D000755 ORTHO05D000642 3.8e-10 70.5 277 23.5
Nn6g33393 Nelumbo nucifera HOM05D004665 ORTHO05D006264 8.7e-07 59.3 103 35.9
BolC3t19617H Brassica oleracea HOM05D004665 ORTHO05D021400 3.3e-06 57.4 64 51.6


User provided reference genes

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