Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 2.1e-108 395.6 187 100.0
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 5.3e-91 337.8 230 74.8
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 8.0e-63 244.2 230 52.6
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 8.0e-63 244.2 231 52.4
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 6.7e-62 241.1 231 53.7
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 2.8e-60 235.7 231 53.2
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 8.2e-60 234.2 230 50.9
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 1.0e-57 227.3 231 50.6
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 8.5e-57 224.2 230 50.9
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 7.2e-56 221.1 230 47.4
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 1.2e-55 220.3 230 49.6
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 1.6e-55 219.9 221 49.8
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 2.1e-55 219.5 233 49.4
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 2.1e-55 219.5 213 50.7
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 2.7e-55 219.2 230 46.5
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 4.7e-55 218.4 230 49.1
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.4e-54 216.9 230 49.1
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 2.3e-54 216.1 230 49.6
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 4.0e-54 215.3 230 49.1
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 4.0e-54 215.3 232 46.6
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 6.8e-54 214.5 230 49.6
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 8.8e-54 214.2 230 47.8
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 1.5e-53 213.4 230 47.8
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 2.0e-53 213.0 230 49.1
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 2.0e-53 213.0 230 48.7
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.6e-53 212.6 230 47.8
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 7.5e-53 211.1 230 47.0
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 7.5e-53 211.1 230 46.1
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-52 210.3 230 47.8
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.7e-52 209.9 230 47.4
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 2.2e-52 209.5 230 47.0
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 2.8e-52 209.1 230 48.3
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 2.8e-52 209.1 230 46.5
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 3.7e-52 208.8 236 48.3
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 3.7e-52 208.8 230 47.4
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 1.8e-51 206.5 231 45.9
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 2.4e-51 206.1 231 45.0
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 3.1e-51 205.7 220 49.1
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 4.1e-51 205.3 230 47.0
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 5.4e-51 204.9 230 45.7
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 7.0e-51 204.5 230 46.1
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 7.0e-51 204.5 216 48.1
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 7.0e-51 204.5 230 45.2
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 9.1e-51 204.1 257 44.4
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 9.1e-51 204.1 216 48.6
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.2e-50 203.8 231 45.9
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.6e-50 203.4 224 46.0
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.6e-50 203.4 231 45.0
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.0e-50 203.0 230 44.8
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 2.0e-50 203.0 231 45.0
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.7e-50 202.6 224 46.9
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 5.9e-50 201.4 219 47.9
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 1.7e-49 199.9 257 44.7
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 2.2e-49 199.5 231 45.0
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 2.2e-49 199.5 230 45.2
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 2.2e-49 199.5 230 45.7
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 6.5e-49 198.0 226 43.8
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 8.5e-49 197.6 233 43.3
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.5e-48 196.8 238 43.7
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.9e-48 196.4 223 46.2
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 2.5e-48 196.1 226 43.4
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 2.5e-48 196.1 231 45.0
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.5e-48 196.1 223 47.1
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.2e-48 195.7 220 45.5
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 4.2e-48 195.3 230 45.2
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 7.2e-48 194.5 215 46.5
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 7.2e-48 194.5 232 44.4
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 9.4e-48 194.1 223 43.9
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 9.4e-48 194.1 230 44.3
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 1.2e-47 193.7 230 44.3
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.2e-47 193.7 225 43.1
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 1.2e-47 193.7 222 45.9
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 1.2e-47 193.7 212 46.2
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 1.6e-47 193.4 230 44.3
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.6e-47 193.4 230 44.3
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.6e-47 193.4 230 44.3
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 2.1e-47 193.0 230 44.8
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 2.7e-47 192.6 230 43.5
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 3.6e-47 192.2 227 45.4
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.7e-47 191.8 230 43.9
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 4.7e-47 191.8 223 46.2
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 6.1e-47 191.4 213 46.5
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 8.0e-47 191.0 231 42.4
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 1.0e-46 190.7 231 43.7
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.4e-46 190.3 214 43.9
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 1.4e-46 190.3 213 45.1
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.8e-46 189.9 213 45.1
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 2.3e-46 189.5 230 42.2
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 4.0e-46 188.7 182 51.6
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 5.2e-46 188.3 213 47.9
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 5.2e-46 188.3 228 45.2
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 8.8e-46 187.6 232 40.9
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 1.2e-45 187.2 228 45.6
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 1.5e-45 186.8 233 44.2
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 1.5e-45 186.8 233 44.2
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.5e-45 186.8 230 42.2
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 2.0e-45 186.4 230 43.0
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.0e-45 186.4 230 43.5
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 2.0e-45 186.4 232 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 3.4e-45 185.7 217 44.7
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 4.4e-45 185.3 228 43.9
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 4.4e-45 185.3 212 46.2
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 5.7e-45 184.9 228 44.7
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 9.8e-45 184.1 219 46.1
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 1.3e-44 183.7 233 44.2
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 1.7e-44 183.3 227 44.5
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 2.2e-44 183.0 227 43.2
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 2.8e-44 182.6 228 43.0
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 2.8e-44 182.6 228 43.0
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 4.9e-44 181.8 231 40.7
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 6.3e-44 181.4 222 43.2
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.8e-43 179.9 214 43.0
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 1.8e-43 179.9 217 46.1
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.8e-43 179.9 222 44.6
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.4e-43 179.5 214 43.0
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.4e-43 179.5 230 41.3
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 2.4e-43 179.5 241 42.7
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 4.1e-43 178.7 208 44.2
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 7.0e-43 177.9 228 43.4
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 9.1e-43 177.6 228 43.0
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.6e-42 176.8 236 40.7
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 2.0e-42 176.4 182 50.5
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 2.7e-42 176.0 184 47.3
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 2.7e-42 176.0 221 43.0
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 5.0e-41 171.8 212 43.4
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.5e-40 169.5 226 39.8
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 1.6e-39 166.8 230 39.1
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-38 163.7 79 97.5
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 3.0e-38 162.5 229 39.3
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 6.8e-38 161.4 229 39.7
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.7e-36 156.8 140 56.4
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.2e-36 156.4 244 38.9
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.9e-36 156.0 283 34.6
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 7.0e-35 151.4 208 40.9
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 2.7e-34 149.4 249 34.9
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.8e-34 147.9 205 41.0
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 1.0e-33 147.5 179 44.7
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 4.7e-31 138.7 214 36.9
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 2.0e-29 133.3 99 63.6
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.7e-28 130.2 168 44.0
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 2.9e-28 129.4 93 63.4
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 4.9e-28 128.6 179 43.0
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.1e-27 127.5 161 42.2
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 6.0e-26 121.7 206 34.0
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.0e-25 120.9 172 39.0
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 1.2e-23 114.0 93 59.1
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.1e-23 113.2 79 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 4.0e-22 109.0 86 58.1
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 5.2e-22 108.6 74 60.8
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 1.5e-21 107.1 142 44.4
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.5e-21 107.1 96 55.2
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 6.4e-20 101.7 95 49.5
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 2.1e-18 96.7 66 63.6
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 4.6e-18 95.5 66 63.6
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.7e-17 93.6 80 56.2
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 5.1e-17 92.0 91 50.5
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.1e-17 92.0 100 47.0
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.1e-16 90.9 105 48.6
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.5e-16 90.5 76 51.3
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 4.3e-16 89.0 61 68.9
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 5.6e-16 88.6 61 63.9
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 9.9e-13 77.8 83 45.8
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 8.4e-12 74.7 59 59.3
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 8.4e-12 74.7 70 51.4
HPP92_021484 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.1e-11 74.3 55 69.1
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 1.3e-09 67.4 64 48.4
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 5.1e-09 65.5 47 63.8
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.5e-08 63.2 53 54.7
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 3.3e-08 62.8 57 50.9
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 3.3e-08 62.8 46 60.9
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 3.3e-08 62.8 46 60.9
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 3.3e-08 62.8 46 60.9
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 4.3e-08 62.4 42 64.3
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 9.6e-08 61.2 40 65.0
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 1.6e-07 60.5 43 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2935 Anthoceros agrestis HOM05D000219 ORTHO05D021059 1.8e-06 57.0 45 53.3
SHI31714 Sapria himalayana HOM05D000219 ORTHO05D004649 2.4e-06 56.6 35 65.7
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.4e-06 56.6 39 69.2


User provided reference genes

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