Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 5.4e-177 624.4 356 100.0
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.6e-112 408.7 265 92.1
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 7.8e-51 205.3 259 49.0
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.7e-50 204.1 271 48.0
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.0e-50 203.4 248 50.0
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.9e-50 203.0 239 52.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 5.1e-50 202.6 212 57.5
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.9e-49 200.7 263 49.4
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.9e-49 200.7 226 50.9
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 5.6e-49 199.1 262 49.2
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 5.6e-49 199.1 214 57.0
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 5.6e-49 199.1 182 59.9
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 7.3e-49 198.7 217 56.7
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 9.5e-49 198.4 255 48.6
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.1e-48 197.2 272 51.1
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.6e-48 196.4 259 49.4
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 8.1e-48 195.3 215 55.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 8.1e-48 195.3 224 54.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.8e-47 194.1 219 54.3
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 2.3e-47 193.7 264 52.3
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 5.2e-47 192.6 260 46.9
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 6.8e-47 192.2 239 54.0
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.8e-47 192.2 230 52.2
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.5e-46 191.0 259 51.0
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.5e-46 191.0 264 53.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.5e-46 191.0 216 54.6
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 2.0e-46 190.7 258 50.0
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.6e-46 190.3 224 50.0
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 2.6e-46 190.3 257 49.4
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.6e-46 190.3 277 46.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 3.4e-46 189.9 228 50.9
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.4e-46 189.5 214 54.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 4.4e-46 189.5 274 46.0
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 5.8e-46 189.1 193 56.5
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.8e-46 189.1 261 52.9
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.6e-46 188.7 214 55.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 9.9e-46 188.3 180 57.8
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 9.9e-46 188.3 215 52.1
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.3e-45 188.0 210 54.8
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.7e-45 187.6 287 47.7
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.2e-45 187.2 213 53.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.2e-45 187.2 226 52.7
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.9e-45 186.0 231 51.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.4e-45 185.7 222 53.2
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 8.4e-45 185.3 248 50.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 8.4e-45 185.3 223 52.5
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 8.4e-45 185.3 220 52.3
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 8.4e-45 185.3 225 52.4
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.1e-44 184.9 225 52.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.4e-44 184.5 210 52.9
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.4e-44 184.5 262 45.0
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.9e-44 184.1 226 52.2
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.9e-44 184.1 169 59.8
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-44 183.3 260 53.5
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.2e-44 183.3 231 48.9
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 4.1e-44 183.0 177 57.6
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 5.4e-44 182.6 211 55.5
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 5.4e-44 182.6 196 52.6
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.2e-43 181.4 265 47.5
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.2e-43 181.4 179 57.5
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.6e-43 181.0 208 52.9
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.6e-43 181.0 219 50.2
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.1e-43 180.6 292 45.9
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.7e-43 180.3 236 51.3
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 3.5e-43 179.9 292 45.5
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 3.5e-43 179.9 292 45.5
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.5e-43 179.9 172 59.3
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 4.6e-43 179.5 238 48.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 6.0e-43 179.1 229 51.1
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.0e-42 178.3 219 52.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.3e-42 177.9 222 49.5
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.7e-42 177.6 252 48.8
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 8.6e-42 175.3 212 50.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.2e-40 171.4 228 46.5
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.6e-40 171.0 242 43.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.8e-40 170.2 209 51.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.7e-40 169.5 222 46.8
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.8e-39 167.5 163 56.4
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.4e-39 167.2 218 49.1
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 3.1e-39 166.8 215 51.6
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 5.2e-39 166.0 160 56.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.0e-38 164.1 266 45.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 3.8e-37 159.8 166 54.2
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.4e-37 159.1 226 46.5
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 4.2e-36 156.4 277 42.2
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 9.3e-36 155.2 211 50.2
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.2e-35 154.8 212 47.2
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-35 154.8 140 61.4
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.7e-35 153.7 248 41.9
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 6.0e-35 152.5 211 44.5
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.7e-34 151.0 218 45.9
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.3e-34 150.6 207 45.9
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 2.3e-34 150.6 292 43.8
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.3e-34 150.6 190 49.5
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.3e-34 150.6 288 36.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.0e-34 150.2 219 42.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 3.9e-34 149.8 217 43.8
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.9e-34 149.8 236 45.3
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.9e-33 147.5 288 38.2
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.9e-33 147.5 211 43.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.9e-33 147.5 211 43.6
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 3.3e-33 146.7 277 40.1
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.3e-32 144.8 211 41.7
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.8e-32 143.7 265 40.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 4.8e-32 142.9 180 46.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 6.2e-32 142.5 182 46.2
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.2e-32 142.5 173 51.4
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 6.2e-32 142.5 120 62.5
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 8.1e-32 142.1 180 46.7
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-31 141.7 231 42.0
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.4e-31 141.4 177 47.5
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.8e-31 141.0 289 37.7
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 3.1e-31 140.2 183 50.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 9.0e-31 138.7 171 49.7
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.5e-30 137.9 164 50.6
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 3.4e-30 136.7 128 59.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-28 131.7 148 54.7
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-28 131.3 154 50.0
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 4.2e-28 129.8 121 55.4
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 4.2e-28 129.8 133 54.1
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 7.1e-28 129.0 154 49.4
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-27 127.5 146 47.9
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.8e-26 124.4 226 42.5
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.3e-26 124.0 111 64.0
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 5.6e-25 119.4 140 46.4
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-22 111.3 241 39.4
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 2.6e-22 110.5 148 49.3
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-21 107.8 138 49.3
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 2.4e-20 104.0 126 47.6
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.7e-19 100.5 104 54.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 3.5e-19 100.1 131 48.1
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 7.9e-19 99.0 231 34.6
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 2.1e-16 90.9 196 34.2
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 8.1e-16 89.0 74 64.9
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 7.6e-14 82.4 240 30.4
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 3.8e-13 80.1 80 51.2
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.1e-12 75.9 84 48.8
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.9e-10 70.1 221 29.9
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 3.9e-10 70.1 175 36.0
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 4.3e-09 66.6 107 41.1
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.3e-08 65.1 95 44.2
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 3.7e-08 63.5 68 57.4
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.4e-07 61.6 219 26.0
HPP92_021536 Vanilla planifolia HOM05D002282 ORTHO05D430710 2.4e-07 60.8 36 86.1
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 2.0e-06 57.8 242 28.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 7.6e-06 55.8 154 30.5
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 1.0e-05 55.5 62 45.2


User provided reference genes

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