Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.2e-120 436.8 264 100.0
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 5.9e-112 407.9 265 92.1
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.4e-49 198.7 228 51.3
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 7.1e-49 198.4 200 59.5
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.2e-48 197.6 219 53.9
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.5e-48 196.1 200 56.5
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 7.8e-48 194.9 203 55.7
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.0e-47 194.5 200 59.0
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 3.0e-47 193.0 201 58.2
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 6.6e-47 191.8 262 47.3
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 6.6e-47 191.8 199 56.8
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 6.6e-47 191.8 181 59.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.5e-46 190.7 191 60.2
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.5e-46 189.9 268 46.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 7.3e-46 188.3 204 55.4
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.6e-45 187.2 202 53.5
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.1e-45 186.8 182 58.2
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.1e-45 186.8 224 51.8
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.8e-45 186.4 224 52.7
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 4.7e-45 185.7 206 56.3
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 6.2e-45 185.3 198 54.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 6.2e-45 185.3 211 56.4
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.4e-44 184.1 207 55.1
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.8e-44 183.7 212 54.2
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.4e-44 183.3 215 52.1
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.4e-44 183.3 203 55.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 2.4e-44 183.3 211 51.7
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 4.0e-44 182.6 207 54.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.8e-44 181.8 266 45.5
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 6.8e-44 181.8 260 50.0
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 8.9e-44 181.4 202 55.9
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-43 180.6 201 54.2
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.6e-43 179.9 187 54.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 4.4e-43 179.1 206 52.4
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.4e-43 179.1 191 57.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 4.4e-43 179.1 260 50.8
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 4.4e-43 179.1 201 52.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 5.8e-43 178.7 202 55.9
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.8e-43 178.7 193 57.0
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.8e-43 178.7 203 54.7
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 7.6e-43 178.3 202 55.9
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 7.6e-43 178.3 165 59.4
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 9.9e-43 177.9 199 55.8
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.3e-42 177.6 165 59.4
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.3e-42 177.6 206 52.4
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.3e-42 177.6 203 54.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.2e-42 176.8 208 53.4
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 2.2e-42 176.8 157 61.1
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.9e-42 176.4 212 52.4
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.9e-42 176.4 206 54.9
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 3.8e-42 176.0 177 58.2
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 3.8e-42 176.0 204 55.4
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 4.9e-42 175.6 205 52.2
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 4.9e-42 175.6 168 58.3
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.4e-42 175.3 226 50.9
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 6.4e-42 175.3 156 62.8
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 8.4e-42 174.9 205 55.1
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 210 52.9
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 210 52.9
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 210 52.9
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.1e-41 174.5 237 47.3
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.4e-41 174.1 207 54.6
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.4e-41 174.1 202 55.0
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.9e-41 173.7 210 48.6
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 2.4e-41 173.3 204 54.4
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.2e-41 172.9 210 53.3
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.2e-41 172.6 214 51.9
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.3e-41 171.4 182 55.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.3e-41 171.4 259 50.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 9.3e-41 171.4 207 48.8
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.6e-40 170.6 207 48.8
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.7e-39 167.2 178 53.4
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 3.9e-39 166.0 229 50.2
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 6.6e-39 165.2 155 57.4
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.1e-38 164.5 211 50.2
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.1e-38 164.5 201 51.7
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-38 164.5 210 48.6
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-38 164.5 151 58.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.3e-38 162.5 244 47.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 7.3e-38 161.8 210 46.7
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.1e-37 160.2 195 49.7
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 8.1e-37 158.3 205 48.8
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 5.3e-36 155.6 168 52.4
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-35 154.5 134 62.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 2.2e-34 150.2 212 47.2
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.9e-34 149.8 205 44.4
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.9e-34 149.8 216 45.8
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.8e-34 149.4 209 45.0
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 3.8e-34 149.4 260 42.7
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 6.4e-34 148.7 207 46.4
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 8.4e-34 148.3 206 45.6
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.9e-33 147.1 160 53.8
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.9e-33 147.1 236 41.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.2e-33 146.4 209 42.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 4.2e-33 146.0 196 45.4
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 5.4e-33 145.6 200 45.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 7.1e-33 145.2 173 51.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.6e-32 144.1 201 43.3
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.6e-32 144.1 205 43.4
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.6e-32 144.1 216 46.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 4.6e-32 142.5 200 44.0
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 4.6e-32 142.5 200 44.0
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 6.0e-32 142.1 179 52.0
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.7e-31 140.6 220 42.3
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.7e-31 140.6 204 45.1
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.3e-31 140.2 201 45.8
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-31 140.2 165 47.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.3e-31 140.2 212 42.5
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 3.9e-31 139.4 201 44.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-30 137.9 163 47.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.9e-30 137.1 164 50.6
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 2.5e-30 136.7 161 47.8
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 2.5e-30 136.7 161 47.8
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 5.6e-30 135.6 117 61.5
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 7.4e-30 135.2 157 49.7
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-29 134.0 146 56.2
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 3.6e-29 132.9 157 49.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 4.8e-29 132.5 121 59.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.4e-28 131.0 133 53.4
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.1e-28 129.8 124 54.0
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.6e-27 126.7 173 46.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 2.6e-27 126.7 165 47.9
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 4.5e-27 125.9 146 47.3
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.3e-23 114.4 127 48.0
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.3e-23 114.4 98 64.3
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.0e-23 113.2 132 53.8
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.3e-22 109.4 148 50.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 5.6e-22 109.0 136 50.0
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 5.3e-20 102.4 120 47.5
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 9.0e-20 101.7 131 48.9
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.0e-19 100.5 104 53.8
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.3e-18 97.8 210 34.8
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.4e-17 94.4 161 37.9
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.8e-15 87.4 74 63.5
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 4.8e-13 79.3 205 31.7
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.5e-11 74.3 67 53.7
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 7.6e-11 72.0 182 32.4
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.0e-10 71.6 175 36.6
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.0e-10 69.3 95 45.3
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 8.5e-10 68.6 107 42.1
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.1e-09 68.2 77 50.6
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 2.1e-08 63.9 214 27.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 8.7e-07 58.5 152 30.3
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.1e-06 58.2 206 29.1
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-06 58.2 62 58.1
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 1.9e-06 57.4 62 46.8
PRCOL_00005222 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 4.3e-06 56.2 115 33.9


User provided reference genes

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