Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021445 Vanilla planifolia HOM05D002893 ORTHO05D003387 7.2e-49 196.8 93 100.0
HPP92_021401 Vanilla planifolia HOM05D002893 ORTHO05D003387 8.1e-24 113.6 111 62.2
Os04g0490300 Oryza sativa ssp. japonica HOM05D002893 ORTHO05D003387 3.8e-13 78.2 98 49.0
Dinv33360 Davidia involucrata HOM05D002893 ORTHO05D003387 2.1e-11 72.4 98 48.0
Zm00001eb078890 Zea mays HOM05D002893 ORTHO05D003387 4.6e-11 71.2 97 44.3
MBI11_g06761_MAGBIO Magnolia biondii HOM05D002893 ORTHO05D003387 6.0e-11 70.9 104 44.2
Duzib187G1811 Durio zibethinus HOM05D002893 ORTHO05D003387 7.8e-11 70.5 99 43.4
Lsat_1_v5_gn_8_149580 Lactuca sativa HOM05D002893 ORTHO05D003387 7.8e-11 70.5 105 45.7
Actinidia09670 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.0e-10 70.1 98 49.0
Actinidia30889 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.3e-10 69.7 98 45.9
Duzib251G0408 Durio zibethinus HOM05D002893 ORTHO05D003387 1.3e-10 69.7 96 46.9
Thecc.04G030500 Theobroma cacao HOM05D002893 ORTHO05D003387 1.7e-10 69.3 97 45.4
HPP92_027106 Vanilla planifolia HOM05D002893 ORTHO05D003387 1.7e-10 69.3 61 65.6
Haze_14840 Corylus avellana HOM05D002893 ORTHO05D003387 2.3e-10 68.9 96 43.8
Lj1g0008810 Lotus japonicus HOM05D002893 ORTHO05D003387 2.3e-10 68.9 90 51.1
Nitab4.5_0009757g0010 Nicotiana tabacum HOM05D002893 ORTHO05D003387 2.3e-10 68.9 92 47.8
Gohir.A09G034400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 3.0e-10 68.6 99 42.4
Thecc.02G275700 Theobroma cacao HOM05D002893 ORTHO05D003387 3.0e-10 68.6 90 47.8
TAR629G0823 Trochodendron aralioides HOM05D002893 ORTHO05D003387 3.0e-10 68.6 96 46.9
arahy.Tifrunner.gnm1.ann1.Y67UYZ Arachis hypogaea HOM05D002893 ORTHO05D003387 3.9e-10 68.2 103 42.7
ECA233G0407 Erigeron canadensis HOM05D002893 ORTHO05D003387 3.9e-10 68.2 105 45.7
CSS0016438 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 5.1e-10 67.8 98 43.9
Gohir.D01G148500 Gossypium hirsutum HOM05D002893 ORTHO05D003387 5.1e-10 67.8 96 44.8
Gorai.002G184300 Gossypium raimondii HOM05D002893 ORTHO05D003387 5.1e-10 67.8 96 44.8
Prupe.3G302900 Prunus persica HOM05D002893 ORTHO05D003387 5.1e-10 67.8 92 46.7
HPP92_024639 Vanilla planifolia HOM05D002893 ORTHO05D003387 5.1e-10 67.8 103 43.7
Cfa007252 Carpinus fangiana HOM05D002893 ORTHO05D003387 6.6e-10 67.4 96 44.8
COL.COLO4_12822 Corchorus olitorius HOM05D002893 ORTHO05D003387 6.6e-10 67.4 96 44.8
Dinv25674 Davidia involucrata HOM05D002893 ORTHO05D003387 6.6e-10 67.4 98 45.9
FvH4_6g53080 Fragaria vesca HOM05D002893 ORTHO05D003387 6.6e-10 67.4 92 46.7
FAN14G0374 Fragaria x ananassa HOM05D002893 ORTHO05D003387 6.6e-10 67.4 92 46.7
FAN14G5777 Fragaria x ananassa HOM05D002893 ORTHO05D003387 6.6e-10 67.4 92 46.7
HanXRQChr14g0450891 Helianthus annuus HOM05D002893 ORTHO05D003387 6.6e-10 67.4 94 43.6
Peaxi162Scf00420g00443 Petunia axillaris HOM05D002893 ORTHO05D003387 6.6e-10 67.4 98 45.9
arahy.Tifrunner.gnm1.ann1.4E1D17 Arachis hypogaea HOM05D002893 ORTHO05D003387 8.7e-10 67.0 105 42.9
Sabra16G0214900 Salix brachista HOM05D002893 ORTHO05D003387 8.7e-10 67.0 92 45.7
arahy.Tifrunner.gnm1.ann1.53Z9F6 Arachis hypogaea HOM05D002893 ORTHO05D003387 1.1e-09 66.6 97 43.3
Gohir.A01G161000 Gossypium hirsutum HOM05D002893 ORTHO05D003387 1.1e-09 66.6 93 44.1
Actinidia38213 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.5e-09 66.2 92 45.7
Nitab4.5_0002887g0120 Nicotiana tabacum HOM05D002893 ORTHO05D003387 1.5e-09 66.2 92 46.7
Potri.001G333600 Populus trichocarpa HOM05D002893 ORTHO05D003387 1.5e-09 66.2 90 46.7
PGR119G0470 Punica granatum HOM05D002893 ORTHO05D003387 1.5e-09 66.2 98 40.8
TAR622G0433 Trochodendron aralioides HOM05D002893 ORTHO05D003387 1.5e-09 66.2 92 46.7
CiPaw.03G052900 Carya illinoinensis HOM05D002893 ORTHO05D003387 1.9e-09 65.9 96 45.8
FAN02G1523 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.9e-09 65.9 90 46.7
PGSC0003DMG400020219 Solanum tuberosum HOM05D002893 ORTHO05D003387 1.9e-09 65.9 92 45.7
TAR371G0635 Trochodendron aralioides HOM05D002893 ORTHO05D003387 1.9e-09 65.9 94 44.7
TAR374G1033 Trochodendron aralioides HOM05D002893 ORTHO05D003387 1.9e-09 65.9 98 44.9
GSVIVG01001817001 Vitis vinifera HOM05D002893 ORTHO05D003387 1.9e-09 65.9 98 43.9
CANSAT01G0501 Cannabis sativa HOM05D002893 ORTHO05D003387 2.5e-09 65.5 97 44.3
CAN.G473.80 Capsicum annuum HOM05D002893 ORTHO05D003387 2.5e-09 65.5 92 46.7
Ciclev10030770m.g Citrus clementina HOM05D002893 ORTHO05D003387 2.5e-09 65.5 98 43.9
HanXRQChr12g0372301 Helianthus annuus HOM05D002893 ORTHO05D003387 2.5e-09 65.5 98 45.9
SalBow8G1069 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.5e-09 65.5 99 46.5
Sc04g0009980 Simmondsia chinensis HOM05D002893 ORTHO05D003387 2.5e-09 65.5 104 41.3
CiPaw.05G113500 Carya illinoinensis HOM05D002893 ORTHO05D003387 3.3e-09 65.1 104 45.2
Gohir.D09G035300 Gossypium hirsutum HOM05D002893 ORTHO05D003387 3.3e-09 65.1 99 40.4
Gorai.006G040200 Gossypium raimondii HOM05D002893 ORTHO05D003387 3.3e-09 65.1 99 40.4
Lj6A823T55 Lonicera japonica HOM05D002893 ORTHO05D003387 3.3e-09 65.1 96 46.9
Sed0012732 Sechium edule HOM05D002893 ORTHO05D003387 3.3e-09 65.1 91 47.3
CSS0036153 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 4.3e-09 64.7 92 43.5
ClCG11G006960 Citrullus lanatus HOM05D002893 ORTHO05D003387 4.3e-09 64.7 90 46.7
Cc11_g16700 Coffea canephora HOM05D002893 ORTHO05D003387 4.3e-09 64.7 96 46.9
DCAR_011311 Daucus carota HOM05D002893 ORTHO05D003387 4.3e-09 64.7 90 43.3
Dinv10981 Davidia involucrata HOM05D002893 ORTHO05D003387 4.3e-09 64.7 96 45.8
Lalb_Chr14g0363081 Lupinus albus HOM05D002893 ORTHO05D003387 4.3e-09 64.7 98 44.9
Potri.010G057300 Populus trichocarpa HOM05D002893 ORTHO05D003387 4.3e-09 64.7 108 42.6
PGR142G1592 Punica granatum HOM05D002893 ORTHO05D003387 4.3e-09 64.7 92 42.4
CANSAT64G1237 Cannabis sativa HOM05D002893 ORTHO05D003387 5.6e-09 64.3 108 38.0
ECA238G2231 Erigeron canadensis HOM05D002893 ORTHO05D003387 5.6e-09 64.3 91 42.9
Phvul.001G096200 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 5.6e-09 64.3 92 45.7
Hund10840 Selenicereus undatus HOM05D002893 ORTHO05D003387 5.6e-09 64.3 93 44.1
GSVIVG01010363001 Vitis vinifera HOM05D002893 ORTHO05D003387 5.6e-09 64.3 96 46.9
DCAR_007012 Daucus carota HOM05D002893 ORTHO05D003387 7.3e-09 63.9 96 43.8
Duzib147G0805 Durio zibethinus HOM05D002893 ORTHO05D003387 7.3e-09 63.9 99 41.4
Eucgr.I01662 Eucalyptus grandis HOM05D002893 ORTHO05D003387 7.3e-09 63.9 95 41.1
Glyma.16G060400 Glycine max HOM05D002893 ORTHO05D003387 7.3e-09 63.9 92 46.7
MD17G1014900 Malus domestica HOM05D002893 ORTHO05D003387 7.3e-09 63.9 99 40.4
Medtr3g085630 Medicago truncatula HOM05D002893 ORTHO05D003387 7.3e-09 63.9 99 43.4
RcHm_v2.0_Chr4g0430901 Rosa chinensis HOM05D002893 ORTHO05D003387 7.3e-09 63.9 92 45.7
Solyc02g093950.3 Solanum lycopersicum HOM05D002893 ORTHO05D003387 7.3e-09 63.9 92 45.7
Sopen02g038600 Solanum pennellii HOM05D002893 ORTHO05D003387 7.3e-09 63.9 92 45.7
CSS0024252 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 9.6e-09 63.5 94 43.6
Gohir.A05G340400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 9.6e-09 63.5 108 40.7
CSS0023379 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 1.3e-08 63.2 92 42.4
Duzib264G0096 Durio zibethinus HOM05D002893 ORTHO05D003387 1.3e-08 63.2 97 43.3
Migut.E00032 Erythranthe guttata HOM05D002893 ORTHO05D003387 1.3e-08 63.2 98 45.9
FAN12G2589 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.3e-08 63.2 90 46.7
FAN17G2054 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.3e-08 63.2 90 46.7
Gohir.D04G078800 Gossypium hirsutum HOM05D002893 ORTHO05D003387 1.3e-08 63.2 108 41.7
Gorai.012G088700 Gossypium raimondii HOM05D002893 ORTHO05D003387 1.3e-08 63.2 108 41.7
Rhsim10G0008700 Rhododendron simsii HOM05D002893 ORTHO05D003387 1.3e-08 63.2 98 43.9
CSS0027251 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 1.6e-08 62.8 96 42.7
Ciclev10014385m.g Citrus clementina HOM05D002893 ORTHO05D003387 1.6e-08 62.8 92 42.4
COL.COLO4_08759 Corchorus olitorius HOM05D002893 ORTHO05D003387 1.6e-08 62.8 97 41.2
Manes.13G016900 Manihot esculenta HOM05D002893 ORTHO05D003387 1.6e-08 62.8 98 43.9
Psat5g095720 Pisum sativum HOM05D002893 ORTHO05D003387 1.6e-08 62.8 99 42.4
CsaV3_6G001110 Cucumis sativus L. HOM05D002893 ORTHO05D003387 2.1e-08 62.4 90 45.6
Glyma.18G008500 Glycine max HOM05D002893 ORTHO05D003387 2.1e-08 62.4 105 41.9
Hma1.2p1_1954F.1_g308870 Hydrangea macrophylla HOM05D002893 ORTHO05D003387 2.1e-08 62.4 98 45.9
MELO3C008209.2 Cucumis melo HOM05D002893 ORTHO05D003387 2.8e-08 62.0 90 44.4
FvH4_4g24120 Fragaria vesca HOM05D002893 ORTHO05D003387 2.8e-08 62.0 90 45.6
Nn3g16524 Nelumbo nucifera HOM05D002893 ORTHO05D003387 2.8e-08 62.0 92 41.3
RcHm_v2.0_Chr2g0174861 Rosa chinensis HOM05D002893 ORTHO05D003387 2.8e-08 62.0 92 43.5
Glyma.19G086700 Glycine max HOM05D002893 ORTHO05D003387 3.6e-08 61.6 92 45.7
Lalb_Chr02g0157821 Lupinus albus HOM05D002893 ORTHO05D003387 3.6e-08 61.6 92 45.7
Medtr7g031370 Medicago truncatula HOM05D002893 ORTHO05D003387 3.6e-08 61.6 95 43.2
QL02p071998 Quercus lobata HOM05D002893 ORTHO05D003387 3.6e-08 61.6 92 43.5
Atru.chr11.2282 Acer truncatum HOM05D002893 ORTHO05D003387 4.8e-08 61.2 98 40.8
CiPaw.04G034800 Carya illinoinensis HOM05D002893 ORTHO05D003387 4.8e-08 61.2 92 44.6
Oeu049154.1 Olea europaea HOM05D002893 ORTHO05D003387 4.8e-08 61.2 97 42.3
Phvul.001G260100 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 4.8e-08 61.2 93 41.9
Sc03g0006770 Simmondsia chinensis HOM05D002893 ORTHO05D003387 4.8e-08 61.2 92 42.4
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 6.2e-08 60.8 90 46.7
Gohir.D01G155900 Gossypium hirsutum HOM05D002893 ORTHO05D003387 6.2e-08 60.8 97 43.3
Gorai.002G193200 Gossypium raimondii HOM05D002893 ORTHO05D003387 6.2e-08 60.8 97 43.3
QL03p054522 Quercus lobata HOM05D002893 ORTHO05D003387 6.2e-08 60.8 88 46.6
vmacro05938 Vaccinium macrocarpon HOM05D002893 ORTHO05D003387 6.2e-08 60.8 92 41.3
VMungo1383G2167 Vigna mungo HOM05D002893 ORTHO05D003387 6.2e-08 60.8 92 42.4
Cpa.g.sc171.35 Carica papaya HOM05D002893 ORTHO05D003387 8.1e-08 60.5 92 42.4
Eucgr.H04660 Eucalyptus grandis HOM05D002893 ORTHO05D003387 8.1e-08 60.5 98 39.8
FAN07G1355 Fragaria x ananassa HOM05D002893 ORTHO05D003387 8.1e-08 60.5 90 45.6
Glyma.11G248800 Glycine max HOM05D002893 ORTHO05D003387 8.1e-08 60.5 105 41.0
Lju41A50T55 Lonicera japonica HOM05D002893 ORTHO05D003387 8.1e-08 60.5 99 42.4
TPR.G21785 Trifolium pratense HOM05D002893 ORTHO05D003387 8.1e-08 60.5 99 42.4
BcaB01g05300 Brassica carinata HOM05D002893 ORTHO05D003387 1.1e-07 60.1 94 41.5
MD13G1115300 Malus domestica HOM05D002893 ORTHO05D003387 1.1e-07 60.1 92 41.3
Ah.02g130670 Amaranthus hybridus HOM05D002893 ORTHO05D003387 1.4e-07 59.7 96 39.6
MSTRG.3091 Avicennia marina HOM05D002893 ORTHO05D003387 1.4e-07 59.7 96 41.7
CARHR199110 Cardamine hirsuta HOM05D002893 ORTHO05D003387 1.4e-07 59.7 100 39.0
Ca_16477_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 1.4e-07 59.7 99 41.4
Ca_29987_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 1.4e-07 59.7 99 41.4
TWI75G1758 Tripterygium wilfordii HOM05D002893 ORTHO05D003387 1.4e-07 59.7 103 40.8
AL6G24910 Arabidopsis lyrata HOM05D002893 ORTHO05D003387 1.8e-07 59.3 94 42.6
Lsat_1_v5_gn_0_14341 Lactuca sativa HOM05D002893 ORTHO05D003387 1.8e-07 59.3 95 40.0
AT5G14230 Arabidopsis thaliana HOM05D002893 ORTHO05D003387 2.4e-07 58.9 103 42.7
C03p07490 Brassica napus HOM05D002893 ORTHO05D003387 2.4e-07 58.9 94 40.4
MD09G1014800 Malus domestica HOM05D002893 ORTHO05D003387 2.4e-07 58.9 96 42.7
SalBow1G0141 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.4e-07 58.9 95 43.2
SalBow1G0350 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.4e-07 58.9 95 43.2
TPR.G25633 Trifolium pratense HOM05D002893 ORTHO05D003387 2.4e-07 58.9 92 45.7
MSTRG.24125 Avicennia marina HOM05D002893 ORTHO05D003387 3.1e-07 58.5 92 42.4
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 3.1e-07 58.5 92 43.5
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 3.1e-07 58.5 97 39.2
Manes.15G158400 Manihot esculenta HOM05D002893 ORTHO05D003387 3.1e-07 58.5 90 42.2
arahy.Tifrunner.gnm1.ann1.S4Z9Q7 Arachis hypogaea HOM05D002893 ORTHO05D003387 4.0e-07 58.2 88 42.0
BolC3t13250H Brassica oleracea HOM05D002893 ORTHO05D003387 4.0e-07 58.2 94 40.4
FAN09G3500 Fragaria x ananassa HOM05D002893 ORTHO05D003387 4.0e-07 58.2 86 44.2
Manes.17G105600 Manihot esculenta HOM05D002893 ORTHO05D003387 4.0e-07 58.2 90 44.4
BcaC04g19051 Brassica carinata HOM05D002893 ORTHO05D003387 5.3e-07 57.8 106 38.7
HanXRQChr17g0550161 Helianthus annuus HOM05D002893 ORTHO05D003387 5.3e-07 57.8 95 44.2
Sp6g29800 Schrenkiella parvula HOM05D002893 ORTHO05D003387 5.3e-07 57.8 92 41.3
EL10Ac6g13460 Beta vulgaris HOM05D002893 ORTHO05D003387 6.9e-07 57.4 96 39.6
BcaB08g36968 Brassica carinata HOM05D002893 ORTHO05D003387 6.9e-07 57.4 104 38.5
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 6.9e-07 57.4 106 38.7
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 6.9e-07 57.4 106 38.7
BraA10t44489Z Brassica rapa HOM05D002893 ORTHO05D003387 1.2e-06 56.6 104 38.5
AUR62030703 Chenopodium quinoa HOM05D002893 ORTHO05D003387 1.2e-06 56.6 91 42.9
Cc07_g00610 Coffea canephora HOM05D002893 ORTHO05D003387 1.2e-06 56.6 92 39.1
Psat3g177400 Pisum sativum HOM05D002893 ORTHO05D003387 1.2e-06 56.6 92 43.5
EL10Ac5g11832 Beta vulgaris HOM05D002893 ORTHO05D003387 1.5e-06 56.2 93 38.7
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 1.5e-06 56.2 94 40.4
Prupe.1G232000 Prunus persica HOM05D002893 ORTHO05D003387 2.6e-06 55.5 92 38.0
Aa31LG11G15020 Aethionema arabicum HOM05D002893 ORTHO05D003387 3.4e-06 55.1 92 39.1
A10p24240 Brassica napus HOM05D002893 ORTHO05D003387 3.4e-06 55.1 104 38.5
AUR62036343 Chenopodium quinoa HOM05D002893 ORTHO05D003387 4.4e-06 54.7 91 41.8
PSO063G5911 Papaver somniferum HOM05D002893 ORTHO05D003387 4.4e-06 54.7 99 39.4
Carub.0006s1243 Capsella rubella HOM05D002893 ORTHO05D003387 5.8e-06 54.3 104 39.4
Cfa009344 Carpinus fangiana HOM05D002893 ORTHO05D003387 5.8e-06 54.3 92 39.1
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 5.8e-06 54.3 97 39.2
THA.LOC104802381 Tarenaya hassleriana HOM05D002893 ORTHO05D003387 5.8e-06 54.3 88 42.0
Atru.chr6.2519 Acer truncatum HOM05D002893 ORTHO05D003387 9.9e-06 53.5 90 41.1
Ah.03g133950 Amaranthus hybridus HOM05D002893 ORTHO05D003387 9.9e-06 53.5 96 37.5
Migut.H00011 Erythranthe guttata HOM05D002893 ORTHO05D003387 9.9e-06 53.5 93 43.0


User provided reference genes

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