Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 2.0e-139 499.2 268 100.0
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 1.7e-111 406.4 258 81.8
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 5.6e-110 401.4 269 78.8
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 7.3e-110 401.0 261 79.7
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 7.3e-110 401.0 261 79.7
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 2.8e-109 399.1 263 79.1
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 4.7e-109 398.3 267 78.3
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 4.7e-109 398.3 267 78.3
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 6.2e-109 397.9 261 79.7
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 1.1e-108 397.1 261 79.7
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 1.8e-108 396.4 257 79.4
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 2.3e-108 396.0 264 78.8
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 2.3e-108 396.0 258 79.1
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.1e-108 395.6 263 77.9
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 4.0e-108 395.2 266 77.8
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 6.8e-108 394.4 259 80.3
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 8.9e-108 394.0 269 76.2
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 8.9e-108 394.0 261 78.5
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 8.9e-108 394.0 259 80.3
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.2e-107 393.7 263 77.2
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.5e-107 393.3 263 77.6
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 1.5e-107 393.3 261 77.8
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.0e-107 392.9 263 77.6
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 2.6e-107 392.5 263 77.6
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 3.4e-107 392.1 255 78.8
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 4.4e-107 391.7 255 80.0
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 9.9e-107 390.6 258 79.5
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 1.3e-106 390.2 264 77.3
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 2.2e-106 389.4 257 79.4
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 2.2e-106 389.4 257 78.6
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 2.9e-106 389.0 259 77.6
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 2.9e-106 389.0 261 77.8
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 2.9e-106 389.0 258 79.5
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 3.7e-106 388.7 256 79.3
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 3.7e-106 388.7 263 77.2
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 3.7e-106 388.7 257 79.0
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 4.9e-106 388.3 261 78.2
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 4.9e-106 388.3 259 77.6
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 6.4e-106 387.9 263 76.4
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 8.3e-106 387.5 253 80.2
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 8.3e-106 387.5 269 75.5
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 1.1e-105 387.1 257 77.8
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 2.4e-105 386.0 279 73.8
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 3.2e-105 385.6 268 73.9
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 4.1e-105 385.2 261 76.6
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 5.4e-105 384.8 259 75.3
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 5.4e-105 384.8 259 75.3
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 7.1e-105 384.4 259 75.3
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 7.1e-105 384.4 261 76.6
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 9.2e-105 384.0 262 74.8
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 1.2e-104 383.6 269 75.5
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 1.6e-104 383.3 253 79.4
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 2.1e-104 382.9 259 74.9
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 2.1e-104 382.9 259 74.9
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 4.6e-104 381.7 257 77.0
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 4.6e-104 381.7 259 76.4
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 4.6e-104 381.7 260 75.0
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 6.0e-104 381.3 253 78.3
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 7.8e-104 380.9 268 71.6
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 7.8e-104 380.9 264 74.6
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 7.8e-104 380.9 266 75.6
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 7.8e-104 380.9 257 77.0
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 7.8e-104 380.9 264 75.0
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 1.0e-103 380.6 259 75.7
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 1.0e-103 380.6 265 75.5
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 1.0e-103 380.6 263 73.8
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 1.3e-103 380.2 264 74.6
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 1.7e-103 379.8 268 72.4
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 1.7e-103 379.8 241 81.7
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 1.7e-103 379.8 258 76.4
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 2.3e-103 379.4 265 72.8
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 3.9e-103 378.6 263 73.8
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 5.1e-103 378.3 263 73.4
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 5.1e-103 378.3 260 76.9
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 1.1e-102 377.1 257 75.9
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 1.1e-102 377.1 266 74.4
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 1.5e-102 376.7 263 73.0
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 1.5e-102 376.7 261 75.9
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 1.5e-102 376.7 261 75.5
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 1.9e-102 376.3 258 75.6
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 2.5e-102 375.9 261 73.9
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 2.5e-102 375.9 261 73.9
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 2.5e-102 375.9 257 75.9
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 5.6e-102 374.8 258 74.8
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 7.3e-102 374.4 266 74.4
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 9.5e-102 374.0 257 75.9
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 9.5e-102 374.0 264 72.3
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 1.6e-101 373.2 259 76.1
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 2.1e-101 372.9 250 76.0
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 8.1e-101 370.9 264 75.4
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 1.1e-100 370.5 260 73.8
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 1.8e-100 369.8 259 73.4
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 1.8e-100 369.8 260 72.7
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 2.4e-100 369.4 259 71.8
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 4.0e-100 368.6 251 74.5
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.2e-99 367.1 268 71.3
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 7.6e-99 364.4 253 73.9
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 9.9e-99 364.0 261 73.2
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 1.4e-97 360.1 266 70.7
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.9e-97 359.8 225 82.2
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 2.4e-97 359.4 290 70.0
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 9.2e-97 357.5 225 81.3
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 3.5e-96 355.5 288 68.1
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 2.5e-94 349.4 255 70.2
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 4.3e-94 348.6 260 69.6
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 5.6e-94 348.2 259 70.7
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 1.4e-92 343.6 234 77.4
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.4e-92 343.6 260 68.1
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.1e-92 342.4 266 65.0
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.3e-92 341.7 260 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.4e-91 338.6 259 66.0
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 7.8e-88 327.8 260 69.2
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 4.3e-86 322.0 253 66.4
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 4.2e-81 305.4 194 81.4
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 7.1e-81 304.7 212 76.4
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 1.2e-80 303.9 252 63.9
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-64 250.0 254 51.2
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.9e-63 245.7 180 68.9
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.0e-59 233.4 158 75.3
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 5.9e-59 231.9 154 79.9
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 4.2e-57 225.7 257 52.9
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 9.7e-54 214.5 154 74.7
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 3.0e-47 193.0 248 41.1
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.6e-46 189.9 237 39.7
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.9e-41 173.7 267 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.5e-38 164.1 229 40.6
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.3e-34 151.0 95 80.0
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 6.1e-32 142.1 236 35.2
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 8.8e-31 138.3 96 74.0
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 5.3e-28 129.0 73 90.4
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 1.5e-25 120.9 117 56.4
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.9e-25 120.6 71 85.9
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 9.4e-25 118.2 234 36.3
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 5.4e-20 102.4 97 62.9
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 2.1e-08 63.9 51 64.7


User provided reference genes

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