Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.6e-65 251.9 127 100.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 4.2e-47 191.4 119 82.4
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.1e-46 189.1 122 82.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.5e-46 188.3 96 96.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 4.6e-46 188.0 95 97.9
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.0e-45 186.8 95 96.8
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.3e-45 185.7 95 95.8
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 2.3e-45 185.7 95 95.8
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-45 185.3 95 94.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 6.6e-45 184.1 96 94.8
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 6.6e-45 184.1 95 93.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.7e-45 183.7 93 96.8
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.7e-45 183.7 92 97.8
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 8.7e-45 183.7 92 97.8
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 8.7e-45 183.7 92 97.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 8.7e-45 183.7 92 97.8
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 8.7e-45 183.7 95 94.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.1e-44 183.3 96 95.8
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.1e-44 183.3 92 96.7
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.1e-44 183.3 92 96.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.9e-44 182.6 97 93.8
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.9e-44 182.6 95 92.6
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.9e-44 182.6 92 96.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.5e-44 182.2 121 80.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 2.5e-44 182.2 92 95.7
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.5e-44 182.2 92 95.7
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 3.3e-44 181.8 92 95.7
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 4.3e-44 181.4 100 92.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 4.3e-44 181.4 92 95.7
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.3e-44 181.4 92 95.7
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 5.6e-44 181.0 92 96.7
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 5.6e-44 181.0 121 79.3
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.6e-44 181.0 92 95.7
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 7.3e-44 180.6 95 94.7
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.3e-43 179.9 92 96.7
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.3e-43 179.9 92 94.6
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.3e-43 179.9 92 95.7
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.3e-43 179.9 92 95.7
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.3e-43 179.9 92 95.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-43 179.9 95 93.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.6e-43 179.5 92 95.7
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.1e-43 179.1 92 94.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 2.1e-43 179.1 96 93.8
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 2.1e-43 179.1 103 88.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 2.8e-43 178.7 92 96.7
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 2.8e-43 178.7 92 94.6
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 2.8e-43 178.7 92 94.6
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 3.6e-43 178.3 92 95.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 4.8e-43 177.9 96 90.6
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 6.2e-43 177.6 92 95.7
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 8.1e-43 177.2 92 95.7
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.1e-42 175.3 97 91.8
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.0e-42 174.9 119 75.6
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.3e-42 174.5 95 88.4
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 5.3e-42 174.5 92 92.4
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 6.9e-42 174.1 101 90.1
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 9.0e-42 173.7 89 94.4
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 5.8e-41 171.0 119 76.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 9.9e-41 170.2 92 94.6
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 2.2e-40 169.1 92 93.5
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 2.9e-40 168.7 125 73.6
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 4.9e-40 167.9 96 87.5
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 4.9e-40 167.9 96 87.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 4.9e-40 167.9 96 87.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 6.4e-40 167.5 93 89.2
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 6.4e-40 167.5 93 89.2
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 7.1e-39 164.1 98 87.8
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 9.3e-39 163.7 98 90.8
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.6e-38 162.9 90 91.1
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 3.5e-38 161.8 99 87.9
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 6.0e-38 161.0 95 91.6
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.8e-37 159.5 86 93.0
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 5.1e-37 157.9 80 97.5
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.1e-36 156.8 85 88.2
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.5e-36 156.4 85 88.2
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 9.6e-36 153.7 122 68.9
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.6e-35 152.9 84 88.1
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.1e-34 150.2 77 94.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 4.9e-32 141.4 77 90.9
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.7e-30 135.6 104 73.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.3e-29 133.3 100 70.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 5.1e-29 131.3 105 71.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.2e-25 120.2 105 62.9
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.0e-24 117.1 72 79.2
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.0e-24 117.1 63 87.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.9e-23 112.8 59 96.6
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.2e-23 112.1 179 42.5
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.2e-22 110.2 177 43.5
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.0e-21 107.1 62 85.5
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.0e-21 107.1 55 98.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 5.1e-21 104.8 204 39.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 8.7e-21 104.0 52 100.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 8.7e-21 104.0 52 100.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 8.7e-21 104.0 52 100.0
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 8.7e-21 104.0 52 100.0
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 8.7e-21 104.0 52 100.0
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.9e-20 102.8 55 92.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.5e-20 102.4 55 94.5
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 4.3e-20 101.7 63 85.7
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 4.3e-20 101.7 52 96.2
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 4.3e-20 101.7 52 98.1
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.1e-18 97.1 52 94.2
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.9e-16 89.0 45 95.6
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 5.0e-16 88.2 48 91.7
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 5.0e-16 88.2 48 91.7
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.5e-15 84.7 96 55.2
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.6e-14 83.2 40 92.5
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.6e-14 83.2 40 92.5
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 3.6e-14 82.0 81 55.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.4e-13 80.1 42 83.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 6.7e-13 77.8 40 87.5
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 9.7e-12 73.9 39 97.4
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.7e-11 72.0 41 85.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.4e-10 70.1 63 66.7
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.1e-10 68.9 45 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.5e-09 66.6 44 75.0
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 5.9e-09 64.7 40 80.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.0e-08 61.6 35 88.6
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 6.5e-08 61.2 72 52.8
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 4.7e-06 55.1 35 77.1


User provided reference genes

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