Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021069 Vanilla planifolia HOM05D034985 ORTHO05D004417 2.2e-62 242.3 135 100.0
HPP92_021007 Vanilla planifolia HOM05D034985 ORTHO05D004417 7.4e-18 94.4 133 55.6
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.0e-16 87.4 129 43.4
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.8e-15 84.7 129 41.9
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.3e-14 83.6 127 41.7
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.7e-14 83.2 125 44.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 128 38.3
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.8e-11 73.2 126 42.1
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.3e-11 72.8 139 32.4
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 8.7e-11 70.9 131 41.2
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.9e-10 69.7 136 38.2
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.5e-10 69.3 128 35.9
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.5e-10 69.3 128 35.9
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 2.5e-10 69.3 131 35.1
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.6e-09 66.6 128 35.2
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.6e-09 66.6 135 37.8
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-09 66.2 131 35.1
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.8e-09 65.9 128 35.2
Zm00001eb296630 Zea mays HOM05D034985 ORTHO05D004417 3.7e-09 65.5 149 34.2
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 4.8e-09 65.1 126 36.5
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 6.2e-09 64.7 129 31.0
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 6.2e-09 64.7 126 36.5
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 6.2e-09 64.7 139 36.0
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.8e-08 63.2 140 35.0
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-08 63.2 140 35.0
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-08 63.2 140 35.0
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.8e-08 63.2 129 34.9
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-08 62.8 140 35.0
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 3.1e-08 62.4 137 32.1
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.3e-08 61.6 134 35.1
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.9e-08 61.2 140 34.3
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.5e-07 60.1 134 32.1
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.5e-07 60.1 126 27.0
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.5e-07 60.1 139 33.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 33.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 32.4
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 32.4
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 32.4
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 33.1
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-07 59.7 139 33.1
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 2.6e-07 59.3 129 29.5
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.4e-07 58.9 138 31.2
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.5e-07 58.5 139 33.1
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.0e-06 57.4 138 27.5
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.0e-06 57.4 131 31.3
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.3e-06 57.0 138 29.0
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.3e-06 57.0 129 34.1
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 2.2e-06 56.2 134 31.3
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 2.2e-06 56.2 126 29.4
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 2.2e-06 56.2 126 29.4
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 2.2e-06 56.2 126 29.4
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.5e-06 54.7 128 32.0
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 8.4e-06 54.3 127 30.7


User provided reference genes

Program Settings