Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.5e-166 588.2 292 100.0
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.7e-84 315.1 271 63.5
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.7e-81 304.7 192 79.7
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.0e-80 304.3 192 80.2
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.9e-79 300.1 194 78.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.3e-79 298.1 192 79.2
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 9.5e-79 297.7 203 75.4
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.1e-78 296.6 192 78.1
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 8.0e-78 294.7 278 58.6
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.4e-77 293.9 195 75.9
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.4e-77 293.9 197 74.6
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 5.2e-77 292.0 192 77.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 8.9e-77 291.2 207 69.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.2e-76 290.8 241 62.7
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.0e-76 290.0 208 69.2
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 7.5e-76 288.1 190 76.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 9.8e-76 287.7 214 67.8
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.7e-75 287.0 190 75.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 3.7e-75 285.8 190 76.3
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 4.9e-75 285.4 190 75.8
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 8.3e-75 284.6 188 73.9
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.1e-74 284.3 267 58.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.1e-74 284.3 198 69.7
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.4e-74 283.9 190 76.3
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.4e-74 283.9 210 67.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.4e-74 283.9 192 73.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.8e-74 283.5 186 78.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.8e-74 283.5 188 73.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.8e-74 283.5 190 75.3
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 2.4e-74 283.1 184 75.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 3.2e-74 282.7 169 79.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 3.2e-74 282.7 192 74.0
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 3.2e-74 282.7 192 74.0
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 3.2e-74 282.7 197 71.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 4.1e-74 282.3 202 67.3
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.0e-74 281.6 190 74.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 9.2e-74 281.2 267 57.3
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.2e-73 280.8 210 68.1
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.2e-73 280.8 188 72.9
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.0e-73 280.0 186 74.2
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.0e-73 280.0 261 57.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 2.0e-73 280.0 211 68.2
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 2.7e-73 279.6 190 74.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 4.6e-73 278.9 240 60.8
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.6e-73 278.9 186 72.0
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.6e-73 278.9 186 72.0
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 4.6e-73 278.9 186 72.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.9e-73 278.5 192 72.9
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.8e-73 278.1 192 71.4
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 7.8e-73 278.1 268 57.8
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.0e-72 277.7 190 73.2
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-72 277.3 176 77.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.7e-72 276.9 187 74.3
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.7e-72 276.9 190 73.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.3e-72 276.6 238 60.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 3.9e-72 275.8 189 72.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.0e-72 275.4 191 72.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 8.6e-72 274.6 187 74.3
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 8.6e-72 274.6 186 72.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 3.3e-71 272.7 191 71.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.3e-71 272.3 189 71.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 5.6e-71 271.9 253 57.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 5.6e-71 271.9 192 68.8
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 9.5e-71 271.2 205 66.3
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 9.5e-71 271.2 205 66.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 9.5e-71 271.2 181 71.8
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.2e-70 270.8 226 62.8
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.6e-70 270.4 271 54.6
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.6e-70 270.4 191 68.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.1e-70 270.0 192 69.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.8e-70 269.6 179 70.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.8e-70 269.6 196 67.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.6e-70 269.2 219 61.6
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.6e-70 269.2 214 64.0
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 4.7e-70 268.9 194 72.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.0e-70 268.1 205 65.9
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 8.0e-70 268.1 179 70.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.0e-70 268.1 179 70.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.0e-70 268.1 179 70.4
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.0e-69 267.7 191 68.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.0e-69 267.7 196 67.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.8e-69 266.9 210 62.4
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.8e-69 266.9 193 69.4
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.1e-69 266.2 217 61.8
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.1e-69 266.2 217 61.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.1e-69 266.2 211 62.6
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.1e-69 266.2 189 69.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 5.2e-69 265.4 225 60.0
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 6.8e-69 265.0 238 58.0
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.2e-68 264.2 188 67.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.5e-68 263.8 192 69.3
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.5e-68 263.8 186 69.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.6e-68 263.1 219 60.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.6e-68 263.1 191 69.1
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 4.4e-68 262.3 195 72.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 4.4e-68 262.3 245 59.2
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 5.8e-68 261.9 263 52.1
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 5.8e-68 261.9 194 68.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 7.5e-68 261.5 190 68.9
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.3e-67 260.8 196 65.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.2e-67 260.0 227 62.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 8.3e-67 258.1 190 64.2
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.2e-66 256.1 203 62.6
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.6e-65 253.8 266 56.0
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 6.0e-65 251.9 193 64.8
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.3e-64 250.0 212 60.8
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-63 247.7 212 60.4
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.8e-62 243.0 216 61.6
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 6.2e-62 241.9 160 72.5
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-60 237.7 190 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.6e-60 236.5 179 65.9
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 2.6e-60 236.5 164 70.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 7.5e-60 235.0 194 61.3
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.9e-56 222.6 134 82.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.1e-54 216.9 183 62.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 8.1e-54 214.9 176 59.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.4e-52 209.1 179 59.8
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 3.8e-51 206.1 154 66.9
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 5.4e-50 202.2 136 73.5
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 6.0e-49 198.7 156 64.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.9e-48 196.1 139 70.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.5e-47 194.1 166 61.4
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-45 187.6 109 81.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-44 184.1 156 61.5
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.8e-36 155.6 93 80.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.1e-32 142.5 193 43.0
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 9.6e-31 138.3 91 67.0
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.8e-30 136.7 187 47.1
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.4e-28 129.8 141 45.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.3e-27 127.9 137 48.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.4e-26 123.6 133 46.6
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.1e-23 114.8 100 59.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 4.8e-22 109.4 129 48.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-21 106.7 83 68.7
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-21 106.7 83 68.7
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.1e-21 106.7 80 67.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.7e-19 100.9 80 67.5
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 8.7e-16 88.6 111 49.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.0e-13 78.6 139 41.7
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.2e-09 68.2 43 69.8
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 8.7e-08 62.0 56 58.9
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.5e-07 60.5 38 71.1


User provided reference genes

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