Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.1e-204 716.5 363 100.0
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 3.0e-98 362.8 369 57.5
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 2.8e-96 356.3 372 55.4
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 1.4e-95 354.0 391 52.9
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.8e-95 353.6 354 57.1
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 5.3e-95 352.1 375 54.4
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.0e-94 350.1 368 54.9
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 7.6e-94 348.2 372 53.5
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 7.6e-94 348.2 369 55.0
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 3.8e-93 345.9 385 52.5
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.1e-92 344.4 373 54.7
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.4e-92 344.0 368 53.3
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 4.2e-92 342.4 378 51.1
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 5.4e-92 342.0 369 53.1
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 9.3e-92 341.3 375 53.3
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.2e-91 340.9 373 53.9
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.7e-91 339.7 374 51.1
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 6.0e-91 338.6 410 52.0
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-90 337.8 371 53.1
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.0e-90 336.3 373 51.7
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 2.5e-89 333.2 379 51.7
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.5e-89 333.2 378 52.6
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 3.3e-89 332.8 371 53.9
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 4.3e-89 332.4 368 52.2
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 5.6e-89 332.0 367 52.9
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 5.6e-89 332.0 368 52.2
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.3e-88 330.9 375 53.9
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.8e-88 329.7 390 51.3
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.8e-88 329.7 371 52.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 3.7e-88 329.3 368 53.8
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.7e-88 329.3 406 51.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 3.7e-88 329.3 366 53.0
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 5.3e-87 325.5 369 51.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 5.3e-87 325.5 364 50.8
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.9e-87 325.1 366 52.2
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.0e-86 323.6 372 50.8
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 2.6e-86 323.2 369 51.5
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.6e-86 323.2 371 51.5
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.6e-86 323.2 367 53.4
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.6e-86 323.2 367 53.1
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 4.5e-86 322.4 368 51.1
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 7.6e-86 321.6 367 52.9
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 7.6e-86 321.6 386 51.3
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 9.9e-86 321.2 366 50.0
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.9e-86 321.2 376 52.4
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 9.9e-86 321.2 376 53.5
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.3e-85 320.9 377 52.3
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.3e-85 320.9 376 52.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.7e-85 320.5 373 53.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.2e-85 320.1 376 52.1
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.9e-85 319.7 377 51.5
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.9e-85 319.7 374 52.9
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 4.9e-85 318.9 367 52.6
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 4.9e-85 318.9 371 51.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 6.4e-85 318.5 376 51.9
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.1e-84 317.8 374 52.4
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.4e-84 317.4 380 50.3
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.4e-84 317.4 366 51.4
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.9e-84 317.0 368 53.8
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 2.4e-84 316.6 376 51.1
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.2e-84 316.2 366 51.9
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.2e-84 315.8 378 51.3
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 4.2e-84 315.8 373 50.4
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 4.2e-84 315.8 376 51.6
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 5.5e-84 315.5 376 52.9
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 7.1e-84 315.1 372 52.4
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 9.3e-84 314.7 364 50.0
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.6e-83 313.9 371 51.2
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 3.5e-83 312.8 391 49.9
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 4.6e-83 312.4 374 50.0
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 6.0e-83 312.0 366 51.4
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.0e-82 311.2 418 46.9
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.3e-82 310.8 373 50.9
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.8e-82 310.5 394 49.5
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.1e-81 307.8 377 51.2
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.5e-81 306.6 391 48.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 4.3e-81 305.8 389 49.1
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 9.6e-81 304.7 411 47.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 9.6e-81 304.7 386 47.4
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 2.8e-80 303.1 371 50.9
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.7e-80 302.8 383 48.8
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.1e-79 301.2 381 47.2
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.4e-79 300.8 377 46.7
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 3.4e-78 296.2 427 43.6
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.3e-77 294.3 363 48.5
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 6.5e-77 292.0 368 49.2
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 6.5e-77 292.0 405 46.7
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.2e-76 289.7 392 44.6
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 3.2e-76 289.7 379 46.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.6e-75 287.3 362 48.9
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 7.9e-75 285.0 386 44.8
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 2.3e-74 283.5 394 43.7
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 3.9e-74 282.7 405 43.2
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 6.7e-74 282.0 384 44.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 4.3e-73 279.3 405 43.5
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 4.3e-73 279.3 379 46.2
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.2e-72 276.9 410 43.4
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 4.8e-72 275.8 362 48.1
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.8e-71 273.9 415 43.4
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 3.1e-71 273.1 404 42.6
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 4.1e-71 272.7 407 42.5
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-70 271.2 409 42.5
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 2.0e-70 270.4 405 44.0
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 2.0e-70 270.4 412 41.5
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.4e-70 269.6 416 42.5
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.1e-68 264.6 365 47.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.9e-68 263.8 408 42.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 2.5e-68 263.5 408 42.4
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 2.5e-68 263.5 309 51.1
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 4.2e-68 262.7 406 42.4
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.5e-62 244.2 334 47.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.9e-58 229.6 368 41.0
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 3.2e-52 209.9 302 44.7
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 9.1e-47 191.8 316 39.6
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.0e-45 188.3 405 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 9.7e-41 171.8 528 28.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 2.2e-40 170.6 292 40.8
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.1e-39 168.3 179 52.5
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.1e-39 168.3 179 52.5
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.1e-39 168.3 179 52.5
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.5e-38 163.3 140 60.7
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 2.3e-34 150.6 278 37.1
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.3e-34 150.6 150 57.3
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.0e-30 137.5 389 30.6
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 2.3e-29 134.0 143 55.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.9e-29 133.7 376 34.0
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.0e-26 125.2 315 34.3
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.6e-22 111.3 201 38.3
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 2.7e-22 110.5 379 29.6
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.7e-22 110.5 379 29.6
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 5.6e-20 102.8 171 40.4
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.4e-17 93.6 198 37.9
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.8e-11 73.9 101 43.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.2e-09 68.6 45 73.3
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.7e-06 57.4 78 41.0
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.5e-06 57.0 125 31.2


User provided reference genes

Program Settings