Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020909 Vanilla planifolia HOM05D000089 ORTHO05D002844 1.8e-50 202.2 98 100.0
HPP92_014658 Vanilla planifolia HOM05D000089 ORTHO05D002844 3.1e-18 95.1 98 52.0
DCAR_014579 Daucus carota HOM05D000089 ORTHO05D002844 1.1e-10 70.1 96 42.7
Thecc.03G225000 Theobroma cacao HOM05D000089 ORTHO05D002844 1.1e-10 70.1 88 38.6
Duzib068G0273 Durio zibethinus HOM05D000089 ORTHO05D002844 1.4e-10 69.7 97 38.1
Nn3g19450 Nelumbo nucifera HOM05D000089 ORTHO05D002844 1.4e-10 69.7 87 40.2
QL09p022949 Quercus lobata HOM05D000089 ORTHO05D002844 1.4e-10 69.7 86 40.7
CDE11G0643 Ceratophyllum demersum HOM05D000089 ORTHO05D002844 1.8e-10 69.3 84 44.0
Eucgr.E00270 Eucalyptus grandis HOM05D000089 ORTHO05D002844 1.8e-10 69.3 91 42.9
TAR375G0823 Trochodendron aralioides HOM05D000089 ORTHO05D002844 1.8e-10 69.3 92 39.1
Os10g0576900 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D002844 2.4e-10 68.9 90 42.2
VMungo1215G2557 Vigna mungo HOM05D000089 ORTHO05D002844 2.4e-10 68.9 92 39.1
CDE12G0758 Ceratophyllum demersum HOM05D000089 ORTHO05D002844 3.1e-10 68.6 94 40.4
CDE06G0456 Ceratophyllum demersum HOM05D000089 ORTHO05D002844 4.1e-10 68.2 94 39.4
Medtr5g029990 Medicago truncatula HOM05D000089 ORTHO05D002844 4.1e-10 68.2 96 37.5
QL12p004806 Quercus lobata HOM05D000089 ORTHO05D002844 4.1e-10 68.2 89 41.6
Zm00001eb024870 Zea mays HOM05D000089 ORTHO05D002844 4.1e-10 68.2 101 41.6
Duzib084G1242 Durio zibethinus HOM05D000089 ORTHO05D002844 5.4e-10 67.8 97 37.1
Ciclev10021083m.g Citrus clementina HOM05D000089 ORTHO05D002844 7.0e-10 67.4 89 37.1
PGSC0003DMG400007665 Solanum tuberosum HOM05D000089 ORTHO05D002844 7.0e-10 67.4 80 40.0
Atru.chr12.1922 Acer truncatum HOM05D000089 ORTHO05D002844 9.1e-10 67.0 105 39.0
Migut.F00083 Erythranthe guttata HOM05D000089 ORTHO05D002844 9.1e-10 67.0 92 38.0
Solyc06g061280.3 Solanum lycopersicum HOM05D000089 ORTHO05D002844 9.1e-10 67.0 80 40.0
Sopen06g021500 Solanum pennellii HOM05D000089 ORTHO05D002844 9.1e-10 67.0 80 40.0
SGA_v2.0_scaffold18G08525 Striga asiatica HOM05D000089 ORTHO05D002844 9.1e-10 67.0 92 38.0
CiPaw.11G095500 Carya illinoinensis HOM05D000089 ORTHO05D002844 1.2e-09 66.6 89 41.6
CDE02G1893 Ceratophyllum demersum HOM05D000089 ORTHO05D002844 1.6e-09 66.2 99 41.4
Dinv25229 Davidia involucrata HOM05D000089 ORTHO05D002844 1.6e-09 66.2 89 39.3
Rhsim03G0223100 Rhododendron simsii HOM05D000089 ORTHO05D002844 1.6e-09 66.2 92 39.1
vmacro00315 Vaccinium macrocarpon HOM05D000089 ORTHO05D002844 1.6e-09 66.2 92 41.3
Actinidia08757 Actinidia chinensis HOM05D000089 ORTHO05D002844 2.0e-09 65.9 104 37.5
Actinidia28414 Actinidia chinensis HOM05D000089 ORTHO05D002844 2.0e-09 65.9 104 37.5
CDE11G0160 Ceratophyllum demersum HOM05D000089 ORTHO05D002844 2.0e-09 65.9 99 40.4
Haze_08196 Corylus avellana HOM05D000089 ORTHO05D002844 2.0e-09 65.9 91 40.7
Oeu060396.1 Olea europaea HOM05D000089 ORTHO05D002844 2.0e-09 65.9 87 39.1
Glyma.09G205700 Glycine max HOM05D000089 ORTHO05D002844 2.7e-09 65.5 96 35.4
Cc08_g02990 Coffea canephora HOM05D000089 ORTHO05D002844 3.5e-09 65.1 78 41.0
GSVIVG01013135001 Vitis vinifera HOM05D000089 ORTHO05D002844 3.5e-09 65.1 87 40.2
Actinidia03363 Actinidia chinensis HOM05D000089 ORTHO05D002844 4.5e-09 64.7 89 42.7
Haze_00387 Corylus avellana HOM05D000089 ORTHO05D002844 4.5e-09 64.7 92 40.2
Glyma.01G017100 Glycine max HOM05D000089 ORTHO05D002844 4.5e-09 64.7 96 34.4
Nn1g00143 Nelumbo nucifera HOM05D000089 ORTHO05D002844 4.5e-09 64.7 84 39.3
Potri.013G079500 Populus trichocarpa HOM05D000089 ORTHO05D002844 4.5e-09 64.7 86 38.4
TWI15G0318 Tripterygium wilfordii HOM05D000089 ORTHO05D002844 4.5e-09 64.7 80 41.2
CSS0029155 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D002844 5.9e-09 64.3 92 39.1
Glyma.08G270600 Glycine max HOM05D000089 ORTHO05D002844 5.9e-09 64.3 80 40.0
Lj2g0026921 Lotus japonicus HOM05D000089 ORTHO05D002844 5.9e-09 64.3 96 34.4
Psat2g137160 Pisum sativum HOM05D000089 ORTHO05D002844 5.9e-09 64.3 96 34.4
TAR629G0259 Trochodendron aralioides HOM05D000089 ORTHO05D002844 5.9e-09 64.3 84 38.1
EL10Ac3g05055 Beta vulgaris HOM05D000089 ORTHO05D002844 7.7e-09 63.9 80 40.0
Lj8A304G51 Lonicera japonica HOM05D000089 ORTHO05D002844 7.7e-09 63.9 92 41.3
Nitab4.5_0000256g0130 Nicotiana tabacum HOM05D000089 ORTHO05D002844 7.7e-09 63.9 80 40.0
Rhsim11G0017400 Rhododendron simsii HOM05D000089 ORTHO05D002844 7.7e-09 63.9 94 40.4
vmacro06530 Vaccinium macrocarpon HOM05D000089 ORTHO05D002844 7.7e-09 63.9 83 41.0
Actinidia25976 Actinidia chinensis HOM05D000089 ORTHO05D002844 1.0e-08 63.5 89 40.4
Gohir.A02G127600 Gossypium hirsutum HOM05D000089 ORTHO05D002844 1.0e-08 63.5 86 40.7
Gohir.D03G053400 Gossypium hirsutum HOM05D000089 ORTHO05D002844 1.0e-08 63.5 92 40.2
Gorai.003G055600 Gossypium raimondii HOM05D000089 ORTHO05D002844 1.0e-08 63.5 92 40.2
Hma1.2p1_0419F.1_g149430 Hydrangea macrophylla HOM05D000089 ORTHO05D002844 1.0e-08 63.5 86 38.4
Phvul.002G140100 Phaseolus vulgaris HOM05D000089 ORTHO05D002844 1.0e-08 63.5 80 38.8
CiPaw.06G034900 Carya illinoinensis HOM05D000089 ORTHO05D002844 1.3e-08 63.2 92 37.0
Gohir.A08G155700 Gossypium hirsutum HOM05D000089 ORTHO05D002844 1.3e-08 63.2 97 35.1
SalBow4G0373 Salvia bowleyana HOM05D000089 ORTHO05D002844 1.3e-08 63.2 92 37.0
SalBow4G2575 Salvia bowleyana HOM05D000089 ORTHO05D002844 1.3e-08 63.2 92 37.0
Solyc08g076780.2 Solanum lycopersicum HOM05D000089 ORTHO05D002844 1.3e-08 63.2 83 41.0
ECA236G0895 Erigeron canadensis HOM05D000089 ORTHO05D002844 1.7e-08 62.8 84 42.9
Hma1.2p1_0303F.1_g118970 Hydrangea macrophylla HOM05D000089 ORTHO05D002844 1.7e-08 62.8 91 37.4
Lalb_Chr05g0215921 Lupinus albus HOM05D000089 ORTHO05D002844 1.7e-08 62.8 96 34.4
Manes.09G128100 Manihot esculenta HOM05D000089 ORTHO05D002844 1.7e-08 62.8 86 34.9
CAN.G474.7 Capsicum annuum HOM05D000089 ORTHO05D002844 2.2e-08 62.4 83 37.3
FvH4_5g22420 Fragaria vesca HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
FAN08G1235 Fragaria x ananassa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
FAN13G1435 Fragaria x ananassa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
FAN13G1576 Fragaria x ananassa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
FAN18G0506 Fragaria x ananassa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
FAN18G3555 Fragaria x ananassa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 89 40.4
Lsat_1_v5_gn_8_108940 Lactuca sativa HOM05D000089 ORTHO05D002844 2.2e-08 62.4 92 37.0
Lalb_Chr16g0381261 Lupinus albus HOM05D000089 ORTHO05D002844 2.2e-08 62.4 87 34.5
MBI04_g41610_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D002844 2.2e-08 62.4 84 35.7
Sc13g0010920 Simmondsia chinensis HOM05D000089 ORTHO05D002844 2.2e-08 62.4 83 38.6
Aqoxy3G02295 Aquilegia oxysepala HOM05D000089 ORTHO05D002844 3.8e-08 61.6 80 36.2
FAN04G0851 Fragaria x ananassa HOM05D000089 ORTHO05D002844 3.8e-08 61.6 89 40.4
Gohir.D08G176300 Gossypium hirsutum HOM05D000089 ORTHO05D002844 3.8e-08 61.6 97 36.1
PGR042G3837 Punica granatum HOM05D000089 ORTHO05D002844 3.8e-08 61.6 89 38.2
Sopen08g025300 Solanum pennellii HOM05D000089 ORTHO05D002844 3.8e-08 61.6 95 36.8
PGSC0003DMG400003152 Solanum tuberosum HOM05D000089 ORTHO05D002844 3.8e-08 61.6 99 35.4
TPR.G8081 Trifolium pratense HOM05D000089 ORTHO05D002844 3.8e-08 61.6 96 34.4
COL.COLO4_16999 Corchorus olitorius HOM05D000089 ORTHO05D002844 5.0e-08 61.2 101 36.6
Gorai.004G184100 Gossypium raimondii HOM05D000089 ORTHO05D002844 5.0e-08 61.2 97 35.1
unitig_747.g21709 Utricularia gibba HOM05D000089 ORTHO05D002844 5.0e-08 61.2 89 37.1
ClCG09G014100 Citrullus lanatus HOM05D000089 ORTHO05D002844 6.5e-08 60.8 82 40.2
Nitab4.5_0007497g0030 Nicotiana tabacum HOM05D000089 ORTHO05D002844 6.5e-08 60.8 90 36.7
CiPaw.12G065600 Carya illinoinensis HOM05D000089 ORTHO05D002844 8.5e-08 60.5 96 35.4
RcHm_v2.0_Chr7g0210161 Rosa chinensis HOM05D000089 ORTHO05D002844 8.5e-08 60.5 89 38.2
Duzib128G0210 Durio zibethinus HOM05D000089 ORTHO05D002844 1.1e-07 60.1 86 38.4
MD01G1237600 Malus domestica HOM05D000089 ORTHO05D002844 1.1e-07 60.1 83 37.3
Ca_25200_v3 Cicer arietinum L. HOM05D000089 ORTHO05D002844 1.5e-07 59.7 96 33.3
Nitab4.5_0004551g0010 Nicotiana tabacum HOM05D000089 ORTHO05D002844 1.5e-07 59.7 91 34.1
Solyc03g097170.3 Solanum lycopersicum HOM05D000089 ORTHO05D002844 1.5e-07 59.7 84 36.9
Sopen03g027910 Solanum pennellii HOM05D000089 ORTHO05D002844 1.5e-07 59.7 84 36.9
Sopen08g025310 Solanum pennellii HOM05D000089 ORTHO05D002844 1.5e-07 59.7 90 37.8
PGSC0003DMG400017542 Solanum tuberosum HOM05D000089 ORTHO05D002844 1.5e-07 59.7 92 38.0
Thecc.05G218900 Theobroma cacao HOM05D000089 ORTHO05D002844 1.5e-07 59.7 93 37.6
COL.COLO4_15196 Corchorus olitorius HOM05D000089 ORTHO05D002844 1.9e-07 59.3 83 37.3
HanXRQChr16g0512431 Helianthus annuus HOM05D000089 ORTHO05D002844 1.9e-07 59.3 89 40.4
CAN.G1131.27 Capsicum annuum HOM05D000089 ORTHO05D002844 3.2e-07 58.5 85 35.3
Nitab4.5_0000556g0010 Nicotiana tabacum HOM05D000089 ORTHO05D002844 3.2e-07 58.5 80 36.2
GSVIVG01024349001 Vitis vinifera HOM05D000089 ORTHO05D002844 3.2e-07 58.5 91 35.2
MD07G1310200 Malus domestica HOM05D000089 ORTHO05D002844 4.2e-07 58.2 83 38.6
PSO063G4377 Papaver somniferum HOM05D000089 ORTHO05D002844 4.2e-07 58.2 80 36.2
PSO063G7032 Papaver somniferum HOM05D000089 ORTHO05D002844 4.2e-07 58.2 80 37.5
PSO832G2948 Papaver somniferum HOM05D000089 ORTHO05D002844 4.2e-07 58.2 80 37.5
CsaV3_2G036590 Cucumis sativus L. HOM05D000089 ORTHO05D002844 5.5e-07 57.8 92 38.0
Solyc08g076790.3 Solanum lycopersicum HOM05D000089 ORTHO05D002844 7.2e-07 57.4 91 38.5
CANSAT21G0734 Cannabis sativa HOM05D000089 ORTHO05D002844 9.4e-07 57.0 95 36.8
MD00G1072500 Malus domestica HOM05D000089 ORTHO05D002844 9.4e-07 57.0 89 31.5
Migut.M01821 Erythranthe guttata HOM05D000089 ORTHO05D000726 1.6e-06 56.2 86 37.2
SEGI_00268 Sequoiadendron giganteum HOM05D000089 ORTHO05D002844 1.6e-06 56.2 94 37.2
ClCG09G017110 Citrullus lanatus HOM05D000089 ORTHO05D002844 2.1e-06 55.8 94 36.2
Prupe.5G032800 Prunus persica HOM05D000089 ORTHO05D002844 2.1e-06 55.8 89 33.7
Sabra01G0109500 Salix brachista HOM05D000089 ORTHO05D002844 2.1e-06 55.8 89 36.0
CANSAT21G1346 Cannabis sativa HOM05D000089 ORTHO05D002844 2.7e-06 55.5 108 32.4
Potri.001G140700 Populus trichocarpa HOM05D000089 ORTHO05D002844 2.7e-06 55.5 89 37.1
Manes.18G001700 Manihot esculenta HOM05D000089 ORTHO05D000104 3.6e-06 55.1 77 39.0
Hund14347 Selenicereus undatus HOM05D000089 ORTHO05D002844 3.6e-06 55.1 83 39.8
Gohir.D01G059900 Gossypium hirsutum HOM05D000089 ORTHO05D000726 4.7e-06 54.7 90 37.8
Gorai.002G081300 Gossypium raimondii HOM05D000089 ORTHO05D000726 4.7e-06 54.7 90 37.8
AUR62018699 Chenopodium quinoa HOM05D000089 ORTHO05D002844 6.1e-06 54.3 80 36.2
Sabra03G0062900 Salix brachista HOM05D000089 ORTHO05D002844 6.1e-06 54.3 89 37.1
ATR0665G612 Amborella trichopoda HOM05D000089 ORTHO05D002844 8.0e-06 53.9 89 33.7
AT4G27250 Arabidopsis thaliana HOM05D000089 ORTHO05D000726 8.0e-06 53.9 86 33.7


User provided reference genes

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