Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 2.8e-163 578.6 289 100.0
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 9.9e-20 101.7 322 32.3
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 3.7e-19 99.8 319 29.8
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 4.9e-19 99.4 323 29.7
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 6.4e-19 99.0 310 32.9
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 8.3e-19 98.6 323 30.0
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 1.9e-18 97.4 318 29.6
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 3.2e-18 96.7 305 30.8
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 4.1e-18 96.3 355 28.5
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 9.2e-18 95.1 315 27.6
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 2.1e-17 94.0 327 30.6
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 2.1e-17 94.0 324 28.4
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 2.7e-17 93.6 319 28.2
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 4.6e-17 92.8 326 29.4
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 4.6e-17 92.8 321 29.0
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 6.0e-17 92.4 327 29.1
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 6.0e-17 92.4 325 28.9
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 7.8e-17 92.0 312 28.2
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 7.8e-17 92.0 326 28.8
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 1.7e-16 90.9 293 30.0
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 1.7e-16 90.9 319 27.6
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 2.3e-16 90.5 346 29.2
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 3.0e-16 90.1 326 29.4
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.9e-16 89.7 321 29.0
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 3.9e-16 89.7 343 27.7
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 3.9e-16 89.7 345 28.7
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 5.1e-16 89.4 335 29.6
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 1.1e-15 88.2 269 32.0
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 1.9e-15 87.4 316 28.8
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 1.9e-15 87.4 321 26.8
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 1.9e-15 87.4 332 27.7
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 1.9e-15 87.4 342 27.2
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 2.5e-15 87.0 305 29.2
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.3e-15 86.7 323 27.9
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 4.3e-15 86.3 320 26.9
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 5.6e-15 85.9 313 28.8
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 9.6e-15 85.1 319 28.2
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 9.6e-15 85.1 319 28.2
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 9.6e-15 85.1 321 29.3
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.6e-14 84.3 311 28.3
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.6e-14 84.3 310 29.0
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 1.6e-14 84.3 317 28.1
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 4.7e-14 82.8 329 26.4
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 4.7e-14 82.8 319 25.4
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 4.7e-14 82.8 313 29.7
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 4.7e-14 82.8 334 26.3
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 8.1e-14 82.0 316 28.5
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 2.4e-13 80.5 319 25.4
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 3.1e-13 80.1 322 25.8
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 5.2e-13 79.3 328 28.7
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 5.2e-13 79.3 311 28.6
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 6.8e-13 79.0 317 28.1
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 6.8e-13 79.0 281 27.8
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 1.2e-12 78.2 323 30.7
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 1.2e-12 78.2 311 28.6
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 1.5e-12 77.8 320 25.9
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 2.6e-12 77.0 312 26.6
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 2.2e-11 73.9 321 26.2
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 4.9e-11 72.8 282 28.7
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 8.4e-11 72.0 294 28.2
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 8.4e-11 72.0 294 27.9
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 1.4e-10 71.2 320 26.9
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 4.2e-10 69.7 276 25.4
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 5.4e-10 69.3 322 27.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 7.1e-10 68.9 226 31.4
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 7.1e-10 68.9 314 25.5
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 1.6e-09 67.8 292 27.7
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 2.7e-09 67.0 278 27.3
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 3.5e-09 66.6 277 28.2
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 6.0e-09 65.9 329 26.1
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 7.8e-09 65.5 352 26.7
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.0e-08 65.1 287 28.2
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 1.0e-08 65.1 263 28.5
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 1.7e-08 64.3 312 26.9
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 3.0e-08 63.5 252 27.8
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 3.0e-08 63.5 301 27.6
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.9e-08 63.2 194 30.9
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 8.7e-08 62.0 348 23.3
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 1.5e-07 61.2 196 27.6
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.9e-07 60.8 259 28.6
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 7.3e-07 58.9 303 25.4
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 9.6e-07 58.5 311 25.1
CDE12G0316 Ceratophyllum demersum HOM05D061004 ORTHO05D043845 2.1e-06 57.4 202 28.7
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 2.1e-06 57.4 348 23.9
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 4.8e-06 56.2 200 31.0
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 8.1e-06 55.5 315 26.0


User provided reference genes

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