Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.1e-174 615.5 302 100.0
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 5.6e-143 511.1 300 88.0
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 2.3e-64 250.0 337 41.8
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.2e-61 239.6 321 43.0
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 4.1e-61 239.2 331 41.4
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 2.7e-60 236.5 331 41.1
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 4.6e-60 235.7 338 41.1
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 4.6e-60 235.7 340 41.5
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 4.6e-60 235.7 340 40.6
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 3.0e-59 233.0 337 40.1
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 8.6e-59 231.5 311 41.5
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-58 231.1 316 41.5
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.5e-58 230.7 335 40.6
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 1.5e-58 230.7 333 40.2
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.5e-58 229.9 337 43.0
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 3.3e-58 229.6 333 39.9
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 3.3e-58 229.6 330 42.4
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 3.3e-58 229.6 334 40.1
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 4.3e-58 229.2 340 39.7
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 5.6e-58 228.8 337 42.1
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 5.6e-58 228.8 328 40.5
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 9.5e-58 228.0 327 40.4
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.2e-57 227.6 329 41.3
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 2.8e-57 226.5 330 40.6
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 3.6e-57 226.1 326 42.0
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 3.6e-57 226.1 333 39.0
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 4.7e-57 225.7 331 38.4
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 4.7e-57 225.7 310 41.6
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.4e-56 224.2 314 41.4
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.4e-56 224.2 332 41.3
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.8e-56 223.8 319 40.4
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 4.0e-56 222.6 323 39.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 8.9e-56 221.5 328 39.9
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.2e-55 221.1 315 39.7
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.4e-55 219.5 328 38.7
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.4e-55 219.5 320 38.8
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 4.4e-55 219.2 327 39.1
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 4.4e-55 219.2 328 39.6
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.6e-55 218.4 328 38.7
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 9.9e-55 218.0 321 38.0
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 9.9e-55 218.0 321 38.0
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 9.9e-55 218.0 328 39.6
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-54 217.6 324 41.4
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.3e-54 217.6 333 38.4
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.3e-54 217.6 330 39.7
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 1.7e-54 217.2 329 40.4
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-54 217.2 328 39.3
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 3.7e-54 216.1 332 39.8
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 4.9e-54 215.7 325 37.2
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 4.9e-54 215.7 336 36.9
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.4e-54 214.9 301 39.9
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-53 214.5 329 38.6
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.9e-53 213.8 333 39.9
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 2.4e-53 213.4 322 41.0
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.4e-53 213.4 333 38.1
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 3.2e-53 213.0 315 40.3
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 4.1e-53 212.6 329 37.7
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.6e-52 210.7 326 36.5
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.1e-52 210.3 333 39.6
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 3.5e-52 209.5 321 41.4
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 7.8e-52 208.4 321 40.8
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 1.0e-51 208.0 317 39.4
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.3e-51 207.6 335 37.6
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.7e-51 207.2 324 40.4
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.3e-51 206.8 325 41.5
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.3e-51 206.8 312 38.8
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 2.3e-51 206.8 336 38.4
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 3.0e-51 206.5 321 42.4
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 5.1e-51 205.7 317 39.4
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 6.6e-51 205.3 346 40.2
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 6.6e-51 205.3 346 40.2
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 8.6e-51 204.9 296 40.9
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.1e-50 204.5 309 39.8
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.1e-50 204.5 345 39.4
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.9e-50 203.8 298 40.3
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 1.9e-50 203.8 336 39.9
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 3.3e-50 203.0 338 36.4
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.6e-50 202.2 323 36.2
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.6e-50 202.2 322 36.6
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 7.3e-50 201.8 320 36.9
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-49 200.7 323 35.9
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.6e-49 200.7 345 38.6
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.1e-49 200.3 334 39.2
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.1e-49 200.3 323 35.9
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 2.1e-49 200.3 313 39.6
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 2.8e-49 199.9 326 37.7
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 8.1e-49 198.4 326 38.3
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.4e-48 197.6 325 39.1
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.1e-48 196.4 312 37.2
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 5.2e-48 195.7 319 39.5
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 8.9e-48 194.9 297 38.4
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 2.0e-47 193.7 324 38.3
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.6e-47 193.4 294 39.1
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.8e-47 192.2 317 39.4
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 5.8e-47 192.2 371 36.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.8e-46 189.5 329 37.7
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 3.8e-46 189.5 298 37.6
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.8e-46 189.5 315 38.7
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.1e-45 188.0 311 40.8
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.1e-45 188.0 305 36.7
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 2.4e-45 186.8 338 36.4
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 2.4e-45 186.8 311 38.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-44 184.5 309 36.6
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.2e-44 184.5 346 35.3
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.1e-44 183.7 299 38.1
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.7e-44 183.3 314 36.9
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.7e-44 183.3 352 38.1
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.5e-44 183.0 314 36.9
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 3.5e-44 183.0 303 38.9
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 6.0e-44 182.2 344 36.0
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 1.0e-43 181.4 292 40.1
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.0e-43 181.4 293 39.2
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-43 181.0 314 36.3
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.3e-43 180.3 339 32.7
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.1e-43 179.1 322 34.2
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 5.1e-43 179.1 285 40.7
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.9e-42 177.2 301 37.2
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 3.3e-42 176.4 352 34.7
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-41 174.5 300 37.0
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 6.2e-41 172.2 327 35.5
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.4e-40 170.2 331 35.6
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.1e-40 169.9 269 39.4
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 4.0e-40 169.5 325 35.7
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.9e-38 163.3 302 38.7
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.4e-37 161.0 291 35.4
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 3.2e-37 159.8 304 34.5
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 9.3e-37 158.3 309 36.6
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.6e-36 157.5 292 36.0
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 1.6e-36 157.5 292 36.0
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.6e-36 157.5 292 36.0
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.0e-35 154.8 294 36.1
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.0e-35 154.8 297 37.0
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.3e-35 154.5 293 35.8
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.9e-35 152.9 291 35.1
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-35 152.9 293 35.2
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-35 152.9 293 35.2
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 5.1e-35 152.5 290 37.2
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.5e-34 151.0 294 37.4
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.9e-34 150.6 313 33.9
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.9e-34 150.6 343 30.0
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.9e-34 150.6 343 30.0
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.3e-34 149.8 322 32.6
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.3e-32 142.5 199 39.7
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.5e-31 141.0 253 35.6
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 1.4e-29 134.4 278 33.1
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.5e-26 123.6 232 33.2
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.6e-26 121.7 298 29.9
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.3e-25 121.3 98 53.1
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 1.3e-25 121.3 197 34.5
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-25 121.3 206 33.0
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 2.8e-25 120.2 316 31.0
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.1e-24 118.2 206 32.5
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.5e-23 114.4 124 50.0
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 5.8e-23 112.5 408 25.7
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.0e-22 111.7 102 51.0
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.3e-22 111.3 284 29.6
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 1.9e-21 107.5 291 30.2
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 7.1e-21 105.5 105 53.3
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.2e-20 104.8 114 50.0
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.5e-20 103.2 125 43.2
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 4.6e-20 102.8 115 47.8
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 6.0e-20 102.4 100 49.0
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 7.9e-20 102.1 124 43.5
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 2.3e-19 100.5 90 56.7
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 3.0e-19 100.1 95 51.6
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 5.1e-19 99.4 91 53.8
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 5.1e-19 99.4 90 55.6
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 5.1e-19 99.4 90 55.6
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 5.1e-19 99.4 90 55.6
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 5.1e-19 99.4 90 55.6
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.9e-18 97.4 91 52.7
TAR365G0582 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.8e-17 93.6 70 61.4
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 3.7e-17 93.2 92 52.2
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.4e-16 91.3 113 44.2
TAR365G0886 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.0e-15 87.4 70 61.4
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.2e-13 79.7 109 42.2
TPR.G3986 Trifolium pratense HOM05D002342 ORTHO05D002407 2.3e-11 73.9 108 40.7
Medtr4g082295 Medicago truncatula HOM05D002342 ORTHO05D002407 1.5e-10 71.2 98 37.8
TPR.G357 Trifolium pratense HOM05D038100 ORTHO05D036767 1.9e-10 70.9 93 40.9
Lj6A523G32 Lonicera japonica HOM05D002342 ORTHO05D002407 2.8e-09 67.0 103 39.8
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 6.3e-09 65.9 131 29.0
VMungo1383G0106 Vigna mungo HOM05D002342 ORTHO05D002407 5.3e-08 62.8 118 32.2
MCO16G136 Micromonas commoda HOM05D002342 ORTHO05D002407 4.5e-07 59.7 102 31.4
VMungo0251G3111 Vigna mungo HOM05D002342 ORTHO05D002407 1.0e-06 58.5 106 34.9
Medtr8g080450 Medicago truncatula HOM05D038100 ORTHO05D036767 2.9e-06 57.0 77 39.0
Cre17.g697150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 6.5e-06 55.8 87 36.8
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 8.5e-06 55.5 63 44.4


User provided reference genes

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