Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.4e-204 716.1 379 100.0
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.6e-70 269.6 375 45.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-68 264.6 376 43.4
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.7e-65 253.4 386 42.5
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.5e-65 253.1 385 41.6
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.3e-64 250.4 377 42.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.8e-62 243.4 373 40.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.6e-62 243.0 389 41.4
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.4e-61 241.1 386 41.5
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 2.3e-61 240.4 383 40.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.0e-60 237.3 385 40.3
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 5.7e-60 235.7 384 41.7
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 5.7e-60 235.7 383 38.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.8e-59 233.4 383 38.6
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-58 231.5 330 43.6
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.8e-58 230.7 385 40.5
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.1e-58 229.9 354 41.0
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 5.4e-58 229.2 387 40.1
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 7.0e-58 228.8 392 39.5
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 9.2e-58 228.4 378 40.5
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.6e-57 227.6 380 38.9
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.7e-57 226.9 382 40.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 4.5e-57 226.1 374 38.8
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 5.9e-57 225.7 382 38.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 5.9e-57 225.7 348 41.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 7.8e-57 225.3 377 39.0
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.0e-56 224.9 384 40.6
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.0e-56 224.9 375 40.0
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.0e-56 224.9 375 40.0
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.7e-56 224.2 385 39.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.9e-56 223.4 380 38.4
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 3.8e-56 223.0 383 39.2
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 5.0e-56 222.6 384 40.9
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.0e-56 222.6 371 39.6
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.6e-56 222.2 371 39.9
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 6.6e-56 222.2 383 41.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 8.6e-56 221.9 357 40.3
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 8.6e-56 221.9 385 39.7
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-55 221.5 383 38.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.5e-55 221.1 382 36.9
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.9e-55 220.7 374 40.4
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 3.3e-55 219.9 374 39.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.3e-55 219.9 381 38.8
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.6e-55 219.2 367 39.8
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-55 219.2 380 37.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.6e-55 219.2 383 41.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.3e-55 218.8 371 39.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.3e-55 218.8 380 37.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.5e-55 218.4 381 38.1
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.6e-54 217.6 372 38.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 2.1e-54 217.2 384 38.5
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.1e-54 217.2 374 39.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.1e-54 217.2 387 38.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 2.8e-54 216.9 387 39.3
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.6e-54 216.5 385 38.7
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.1e-54 215.7 373 39.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.1e-54 215.7 384 40.4
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.8e-53 214.2 389 38.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.0e-53 213.4 386 39.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.0e-53 213.0 327 41.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 4.0e-53 213.0 373 38.3
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.2e-53 212.6 375 38.4
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 5.2e-53 212.6 385 40.0
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.8e-53 212.2 327 42.5
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 8.9e-53 211.8 388 38.1
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.9e-53 211.8 381 39.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 8.9e-53 211.8 372 39.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.2e-52 211.5 371 37.7
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.2e-52 211.5 375 37.6
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.5e-52 211.1 333 38.4
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.4e-52 209.9 374 38.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 5.8e-52 209.1 375 37.9
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-51 207.2 368 39.9
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.9e-51 206.8 375 38.1
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.1e-50 204.9 382 34.0
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.4e-50 204.5 381 38.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-50 204.5 378 38.1
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-50 204.5 394 36.5
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.4e-50 204.5 377 38.2
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.1e-50 203.0 373 38.9
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 5.4e-50 202.6 377 39.5
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.0e-50 202.2 373 38.3
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 9.2e-50 201.8 372 36.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 9.2e-50 201.8 339 40.4
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 9.2e-50 201.8 333 39.6
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.2e-49 201.4 327 42.2
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.6e-49 201.1 368 39.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.5e-49 199.9 347 38.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.5e-49 199.9 373 39.7
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.5e-49 199.9 373 39.7
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 3.5e-49 199.9 372 37.9
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.6e-49 199.5 378 37.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.0e-48 198.4 382 37.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.3e-48 198.0 369 36.0
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-48 197.6 373 38.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.7e-48 197.6 332 39.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.1e-47 194.9 378 38.6
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.9e-47 194.1 379 37.2
HPP92_028133 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.3e-47 193.0 154 68.8
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 5.6e-47 192.6 373 39.7
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 5.6e-47 192.6 373 38.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.6e-47 192.6 371 36.1
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.6e-47 192.6 306 37.6
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 7.3e-47 192.2 383 32.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 7.3e-47 192.2 355 36.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 7.3e-47 192.2 377 36.6
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.5e-47 191.8 375 37.1
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.5e-47 191.8 375 37.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.6e-46 191.0 374 35.6
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-46 190.7 367 39.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.1e-46 190.7 414 35.3
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.1e-46 190.7 382 36.1
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.6e-46 189.9 376 38.6
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.6e-46 189.9 376 38.6
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.6e-46 189.9 370 37.6
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-45 188.3 367 39.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.8e-45 187.6 337 35.9
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 5.2e-45 186.0 358 37.7
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 5.2e-45 186.0 373 34.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.2e-44 184.9 375 36.0
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.6e-44 183.7 367 39.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.6e-44 183.7 374 35.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 4.4e-44 183.0 372 38.4
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 4.9e-43 179.5 371 35.8
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.1e-40 169.5 314 34.4
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.1e-37 160.2 330 34.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 8.9e-37 158.7 358 34.4
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.5e-36 157.9 287 35.5
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 5.1e-32 142.9 203 42.4
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.9e-27 126.3 339 33.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 9.2e-26 122.1 284 31.0
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 6.0e-25 119.4 291 33.0
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 5.6e-23 112.8 335 30.7
HPP92_028132 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.4e-21 108.2 83 73.5
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.9e-18 97.8 115 48.7
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.6e-17 94.7 381 27.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.7e-17 94.0 123 45.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 6.6e-16 89.4 385 26.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.8e-14 84.0 157 33.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.1e-13 80.5 202 30.2
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 3.4e-12 77.0 117 41.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.2e-10 70.5 246 26.4
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.2e-10 70.1 383 23.2
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-06 58.2 97 32.0
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.7e-06 57.0 124 29.8
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.8e-06 56.6 268 24.6
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 4.8e-06 56.6 95 37.9
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 4.8e-06 56.6 95 38.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.2e-06 56.2 93 36.6


User provided reference genes

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