Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 9.4e-259 896.3 455 100.0
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 8.1e-85 318.5 346 51.4
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.1e-84 318.2 261 58.2
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.0e-83 313.9 336 50.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.0e-83 313.9 334 51.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.3e-82 311.2 344 49.4
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.7e-82 310.8 342 49.7
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.8e-82 309.7 338 51.5
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.1e-81 305.4 336 47.9
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 9.2e-81 305.1 296 52.7
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.2e-80 304.7 336 47.9
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.7e-80 303.5 321 52.0
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.7e-80 303.5 336 47.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.7e-80 303.5 344 48.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-80 303.1 338 48.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-80 303.1 336 47.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 3.5e-80 303.1 335 50.1
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.0e-80 302.4 343 49.0
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 6.0e-80 302.4 314 50.6
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 7.8e-80 302.0 329 48.9
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.0e-79 301.6 336 47.9
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.0e-79 301.6 324 50.6
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.7e-79 300.8 320 49.1
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.3e-79 300.4 335 47.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.0e-79 300.1 317 50.2
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.9e-79 299.7 342 46.5
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 3.9e-79 299.7 320 49.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.9e-78 297.4 325 49.5
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.5e-78 297.0 346 48.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.3e-78 296.2 343 48.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 5.6e-78 295.8 346 46.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 5.6e-78 295.8 266 54.5
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.6e-78 295.8 336 48.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 9.6e-78 295.0 338 46.4
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 9.6e-78 295.0 339 48.7
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 9.6e-78 295.0 335 48.1
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.2e-77 294.7 337 47.5
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.1e-77 293.9 324 49.4
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.8e-77 293.5 333 48.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.2e-77 292.4 287 52.3
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 6.2e-77 292.4 336 48.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.1e-77 292.0 327 49.5
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-76 290.8 340 47.9
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.8e-76 290.8 344 48.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 3.1e-76 290.0 326 48.2
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.1e-76 290.0 346 45.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.1e-76 290.0 326 49.1
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.1e-76 290.0 325 48.9
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 5.3e-76 289.3 334 46.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 6.9e-76 288.9 255 54.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 6.9e-76 288.9 335 46.6
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.0e-76 288.5 324 47.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.2e-75 288.1 320 48.1
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.5e-75 287.7 322 47.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.0e-75 287.3 319 48.0
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.0e-75 287.3 344 47.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 3.4e-75 286.6 322 48.4
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.8e-75 285.8 281 49.5
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 5.8e-75 285.8 281 49.5
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 5.8e-75 285.8 327 47.1
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.6e-75 285.4 326 47.5
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.3e-74 284.6 342 48.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.2e-74 283.9 327 46.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.1e-73 281.6 331 45.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.4e-73 281.2 275 49.5
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.4e-73 281.2 351 47.6
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.5e-72 276.6 320 48.1
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 4.6e-72 276.2 339 45.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 4.6e-72 276.2 319 47.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.0e-72 275.8 308 45.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.0e-71 275.0 303 49.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.7e-71 274.2 322 46.9
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 5.1e-71 272.7 251 52.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 6.6e-71 272.3 323 44.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 6.6e-71 272.3 269 52.8
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.1e-70 271.6 342 45.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.9e-70 270.8 286 51.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.3e-69 268.1 341 45.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.8e-69 266.9 342 45.3
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.6e-69 266.5 320 46.9
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 7.6e-67 258.8 326 45.7
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-66 258.1 306 47.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.7e-66 257.7 238 55.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 6.4e-66 255.8 259 50.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-65 255.0 259 49.4
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 5.4e-65 252.7 349 43.8
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.2e-64 251.5 247 53.8
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-64 251.1 261 49.4
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.7e-64 250.4 336 43.2
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.6e-64 249.6 305 46.6
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.3e-63 247.3 307 44.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.3e-63 247.3 305 48.2
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.5e-62 244.6 240 52.5
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.4e-62 242.3 243 54.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 7.4e-62 242.3 254 50.8
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 9.6e-62 241.9 335 44.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.7e-61 240.0 328 43.9
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.0e-60 236.5 240 53.8
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.6e-59 233.8 291 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.3e-58 231.5 290 44.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.3e-58 231.5 289 43.9
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.4e-57 228.0 332 42.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-56 224.9 267 45.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 6.0e-56 222.6 331 40.8
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 6.0e-56 222.6 255 45.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.3e-55 220.7 314 43.9
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.9e-55 219.9 251 51.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 5.1e-55 219.5 285 44.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.3e-53 214.9 275 40.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 8.2e-53 212.2 276 43.5
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.4e-51 206.8 228 47.8
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.0e-50 205.3 246 49.6
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.8e-50 203.4 255 43.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.3e-47 194.1 232 45.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.3e-47 194.1 232 45.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 9.0e-44 182.2 218 46.8
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.6e-43 180.6 174 52.3
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-43 179.1 185 47.6
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.5e-42 175.6 255 42.0
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 2.7e-40 170.6 155 54.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 6.7e-39 166.0 321 35.5
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.2e-37 161.0 254 39.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 8.2e-37 159.1 268 34.7
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.4e-36 158.3 144 54.2
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 9.1e-36 155.6 207 43.0
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.6e-35 154.1 154 50.0
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.9e-34 150.6 132 53.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-34 150.6 165 48.5
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.4e-33 148.3 179 45.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.2e-33 146.0 227 37.4
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.7e-32 144.1 136 51.5
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.0e-31 142.1 167 44.9
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 8.8e-31 139.0 159 48.4
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 8.8e-23 112.5 265 29.1
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-22 112.1 118 48.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-21 106.7 109 47.7
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 8.2e-21 105.9 63 77.8
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.0e-20 102.8 147 44.2
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.0e-19 101.3 128 43.8
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 3.5e-19 100.5 180 31.7
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-15 88.2 199 32.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.8e-10 70.5 67 53.7
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 5.0e-10 70.1 86 44.2
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 4.2e-09 67.0 180 29.4


User provided reference genes

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