Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.8e-81 304.7 142 100.0
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 6.7e-78 293.9 142 97.2
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.6e-50 202.2 139 65.5
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.6e-50 202.2 124 72.6
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.5e-50 201.4 148 60.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 7.7e-50 200.7 118 72.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 7.7e-50 200.7 122 70.5
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.0e-49 200.3 147 61.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.3e-49 199.9 139 64.7
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.2e-49 199.1 140 65.7
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 5.0e-49 198.0 131 67.9
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 8.5e-49 197.2 149 61.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.1e-48 196.8 148 59.5
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.4e-48 196.4 116 72.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.9e-48 196.1 116 72.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.9e-48 196.1 149 59.7
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.5e-48 195.7 141 61.0
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.5e-48 195.7 123 69.9
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.2e-48 195.3 144 65.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.2e-48 194.9 129 65.9
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.2e-48 194.9 123 68.3
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 4.2e-48 194.9 135 64.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 4.2e-48 194.9 145 62.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 5.5e-48 194.5 124 67.7
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.5e-48 194.5 121 68.6
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.5e-48 194.5 121 68.6
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 5.5e-48 194.5 146 61.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.5e-48 194.5 146 61.0
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 5.5e-48 194.5 141 63.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 9.4e-48 193.7 141 63.1
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.1e-47 192.6 129 65.1
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.1e-47 192.6 127 64.6
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.7e-47 192.2 120 70.0
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.7e-47 192.2 142 61.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.7e-47 192.2 122 67.2
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 3.6e-47 191.8 145 61.4
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 3.6e-47 191.8 123 68.3
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 4.6e-47 191.4 141 63.8
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 6.1e-47 191.0 144 60.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 6.1e-47 191.0 142 61.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 7.9e-47 190.7 140 62.1
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 7.9e-47 190.7 147 60.5
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.9e-47 190.7 121 66.9
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.4e-46 189.9 123 65.0
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.8e-46 189.5 146 58.9
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 2.3e-46 189.1 140 62.1
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.3e-46 189.1 119 66.4
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.3e-46 189.1 119 66.4
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.3e-46 189.1 121 67.8
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 3.0e-46 188.7 122 67.2
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 3.0e-46 188.7 133 63.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.0e-46 188.7 119 68.1
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.9e-46 188.3 136 62.5
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 3.9e-46 188.3 115 68.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 3.9e-46 188.3 152 57.9
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 5.1e-46 188.0 142 59.9
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 5.1e-46 188.0 140 63.6
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 6.7e-46 187.6 140 60.7
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 8.8e-46 187.2 139 61.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 8.8e-46 187.2 134 61.9
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 8.8e-46 187.2 133 63.9
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.1e-45 186.8 149 59.7
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.1e-45 186.8 138 63.8
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.5e-45 186.4 121 64.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.5e-45 186.4 121 66.9
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.6e-45 185.7 134 61.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-45 185.7 138 61.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.3e-45 185.3 138 62.3
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.4e-45 184.9 141 61.0
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 7.4e-45 184.1 138 60.9
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 9.7e-45 183.7 134 61.2
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 9.7e-45 183.7 129 61.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 9.7e-45 183.7 134 60.4
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 9.7e-45 183.7 138 62.3
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.3e-44 183.3 134 61.2
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.3e-44 183.3 134 61.2
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.3e-44 183.3 141 60.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.3e-44 183.3 146 58.9
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.3e-44 183.3 124 63.7
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.7e-44 183.0 115 68.7
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.7e-44 183.0 134 60.4
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 2.2e-44 182.6 135 63.0
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.8e-44 182.2 142 60.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.3e-44 181.0 135 60.0
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.1e-43 180.3 120 64.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.1e-43 180.3 134 59.7
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-43 179.9 115 67.0
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.4e-43 179.9 134 61.9
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 5.3e-43 177.9 117 65.0
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 6.9e-43 177.6 124 62.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.5e-42 176.4 126 65.1
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-42 175.6 132 61.4
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 5.9e-42 174.5 132 61.4
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.0e-41 173.7 143 58.7
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.8e-41 171.8 142 54.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.2e-40 168.7 133 57.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 5.5e-40 167.9 109 66.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 3.6e-39 165.2 168 49.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.4e-38 163.3 121 60.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.5e-32 142.5 121 54.5
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 8.0e-31 137.5 122 54.1
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.0e-30 135.6 85 67.1
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 8.8e-30 134.0 115 52.2
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.0e-29 132.9 117 47.9
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.3e-28 130.2 131 47.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.4e-27 126.7 80 66.2
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.5e-24 116.7 74 67.6
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.5e-24 115.9 75 65.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.0e-22 109.0 89 49.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.0e-21 106.3 96 46.9
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.6e-21 105.9 92 51.1
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 4.4e-21 105.1 120 46.7
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 7.5e-21 104.4 93 45.2
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.3e-20 103.6 92 50.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.7e-20 103.2 134 41.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.5e-18 95.5 139 40.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.5e-16 90.1 59 61.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-16 90.1 99 40.4
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.5e-16 90.1 93 43.0
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.9e-16 89.7 92 43.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 9.8e-13 77.4 69 49.3
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.0e-09 67.4 54 53.7
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.9e-09 65.9 64 43.8
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 3.8e-09 65.5 53 58.5
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.0e-09 65.1 74 48.6
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 8.6e-09 64.3 41 68.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 4.7e-07 58.5 38 65.8
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-06 57.0 41 51.2


User provided reference genes

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