Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.1e-71 271.6 126 100.0
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.6e-43 178.3 116 81.0
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.5e-20 103.2 90 56.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.9e-18 94.4 90 50.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.2e-17 93.6 90 51.1
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.5e-17 93.2 88 47.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.5e-17 93.2 90 50.0
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 4.4e-17 91.7 90 51.1
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 5.8e-17 91.3 90 48.9
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 5.8e-17 91.3 88 47.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 5.8e-17 91.3 90 50.0
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.6e-17 90.9 90 47.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 7.6e-17 90.9 90 52.2
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 7.6e-17 90.9 90 48.9
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-16 90.1 91 46.2
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.3e-16 90.1 88 52.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.7e-16 89.7 91 50.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.2e-16 89.4 88 47.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.2e-16 89.4 90 50.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.9e-16 89.0 90 45.6
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 2.9e-16 89.0 91 45.1
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.9e-16 89.0 88 50.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.8e-16 88.6 90 50.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 3.8e-16 88.6 90 47.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.9e-16 88.2 89 48.3
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.4e-16 87.8 131 41.2
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.4e-16 87.8 88 47.7
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 6.4e-16 87.8 89 47.2
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.4e-16 87.8 90 48.9
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 6.4e-16 87.8 90 48.9
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.4e-16 87.4 88 50.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.4e-16 87.4 90 48.9
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.4e-16 87.4 91 50.5
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.1e-15 87.0 90 47.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.1e-15 87.0 91 49.5
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.1e-15 87.0 90 51.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.1e-15 87.0 90 47.8
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-15 87.0 90 47.8
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.9e-15 86.3 90 51.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-15 86.3 90 47.8
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.9e-15 86.3 89 46.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.4e-15 85.9 90 47.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.4e-15 85.9 90 47.8
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.4e-15 85.9 95 47.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.4e-15 85.9 88 47.7
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.4e-15 85.9 88 47.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.4e-15 85.9 88 47.7
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.2e-15 85.5 89 51.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.2e-15 85.5 89 51.7
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.2e-15 85.5 90 46.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.2e-15 85.5 95 47.4
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.2e-15 85.5 88 50.0
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 3.2e-15 85.5 89 49.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 4.2e-15 85.1 93 46.2
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.2e-15 85.1 88 43.2
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.4e-15 84.7 89 51.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 5.4e-15 84.7 92 48.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.4e-15 84.7 90 45.6
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 5.4e-15 84.7 93 45.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 7.1e-15 84.3 90 48.9
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 7.1e-15 84.3 90 47.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.3e-15 84.0 91 45.1
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 9.3e-15 84.0 89 46.1
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 9.3e-15 84.0 90 48.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.3e-15 84.0 88 47.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.2e-14 83.6 88 46.6
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.2e-14 83.6 91 45.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.2e-14 83.6 93 47.3
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-14 83.6 88 43.2
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.6e-14 83.2 91 45.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.6e-14 83.2 91 46.2
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.6e-14 83.2 88 50.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-14 83.2 89 47.2
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-14 83.2 89 47.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.6e-14 83.2 90 46.7
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.6e-14 83.2 93 43.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.6e-14 83.2 88 47.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.1e-14 82.8 91 47.3
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-14 82.8 89 46.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.1e-14 82.8 92 45.7
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.7e-14 82.4 93 47.3
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.7e-14 82.4 92 47.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.5e-14 82.0 93 46.2
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.5e-14 82.0 88 46.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 3.5e-14 82.0 99 42.4
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.6e-14 81.6 88 45.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.6e-14 81.6 88 45.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 6.0e-14 81.3 91 41.8
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 6.0e-14 81.3 93 43.0
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.0e-14 81.3 88 45.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 6.0e-14 81.3 92 45.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 6.0e-14 81.3 90 43.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 7.9e-14 80.9 90 44.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.0e-13 80.5 88 43.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-13 80.5 89 44.9
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.0e-13 80.5 91 47.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.0e-13 80.5 90 48.9
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-13 79.7 93 45.2
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-13 79.7 93 45.2
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-13 79.7 93 45.2
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.7e-13 79.7 93 45.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-13 79.7 93 45.2
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.7e-13 79.7 111 37.8
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.7e-13 79.7 91 49.5
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.0e-13 79.0 91 47.3
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.0e-13 79.0 88 46.6
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.0e-13 79.0 88 44.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 3.9e-13 78.6 90 46.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 5.1e-13 78.2 95 43.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 5.1e-13 78.2 95 43.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.1e-13 78.2 91 45.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 5.1e-13 78.2 88 44.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 6.6e-13 77.8 88 44.3
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 6.6e-13 77.8 88 47.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 8.7e-13 77.4 94 43.6
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 8.7e-13 77.4 93 44.1
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 8.7e-13 77.4 90 44.4
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.1e-12 77.0 93 44.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.1e-12 77.0 90 40.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.5e-12 76.6 90 43.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.9e-12 76.3 90 43.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.9e-12 76.3 90 44.4
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.9e-12 76.3 91 44.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.5e-12 75.9 90 41.1
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.6e-12 74.7 91 41.8
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.6e-12 74.7 91 41.8
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 5.6e-12 74.7 91 42.9
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-11 73.6 92 44.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-11 73.6 91 40.7
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.3e-11 73.6 88 42.0
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-11 73.6 88 44.3
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.6e-11 73.2 75 49.3
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.6e-11 73.2 88 43.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.1e-11 72.8 91 45.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-11 72.8 92 44.6
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.1e-11 72.8 88 48.9
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 4.0e-10 68.6 88 40.9
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.3e-10 68.2 93 41.9
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.9e-10 67.8 89 42.7
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 9.0e-10 67.4 49 61.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.2e-09 67.0 92 42.4
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.4e-09 65.5 83 39.8
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-08 63.5 91 39.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.2e-08 62.8 49 57.1
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.8e-08 62.0 81 38.3
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 6.4e-08 61.2 124 33.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.4e-07 59.3 49 55.1
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.4e-07 59.3 93 39.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 4.2e-07 58.5 77 42.9
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.6e-06 55.1 55 52.7


User provided reference genes

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