Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.1e-203 712.2 387 100.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.8e-46 190.3 404 36.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.0e-43 181.8 393 37.7
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.9e-42 177.6 410 34.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.5e-42 176.0 395 35.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 5.5e-42 176.0 380 35.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.4e-42 175.3 394 34.8
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 9.4e-42 175.3 385 34.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 6.7e-40 169.1 358 36.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.7e-40 169.1 385 33.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 8.8e-40 168.7 386 35.8
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 8.8e-40 168.7 386 35.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.5e-39 167.9 397 35.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.4e-39 166.4 395 34.4
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 9.7e-39 165.2 387 35.4
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-38 164.9 395 33.9
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.7e-38 164.5 393 33.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.8e-38 163.7 403 34.2
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.7e-38 163.3 323 37.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.1e-37 161.8 381 35.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.1e-37 159.8 385 34.3
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.3e-37 159.5 397 35.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.3e-37 159.5 395 33.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.6e-36 157.9 390 34.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-36 157.9 360 33.9
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.6e-36 157.1 385 36.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.5e-36 156.8 392 34.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.7e-36 155.6 381 33.6
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.3e-35 154.8 395 35.2
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.0e-35 152.9 388 33.0
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.0e-35 152.9 303 36.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 6.5e-35 152.5 340 36.2
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 6.5e-35 152.5 346 35.3
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-34 151.8 379 38.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.1e-34 151.8 404 36.1
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.5e-34 151.4 334 35.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.2e-34 149.8 355 34.6
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 5.5e-34 149.4 392 32.1
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 7.2e-34 149.1 384 33.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 7.2e-34 149.1 396 32.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 9.4e-34 148.7 350 34.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 9.4e-34 148.7 353 33.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-33 148.3 371 33.4
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.2e-33 148.3 387 32.3
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.6e-33 147.9 405 32.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.6e-33 147.9 357 35.3
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.6e-33 146.7 233 39.9
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.6e-33 146.7 235 40.9
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.0e-32 145.2 406 33.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.3e-32 144.1 242 40.1
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.0e-32 143.7 391 31.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.0e-32 143.3 240 41.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 5.2e-32 142.9 392 31.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.2e-32 142.9 394 33.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 8.8e-32 142.1 424 30.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.2e-31 141.7 393 31.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.2e-31 141.7 228 42.1
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.5e-31 141.4 250 37.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.5e-31 141.4 267 38.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-31 141.4 267 38.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.5e-31 141.4 370 31.9
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.5e-31 141.4 370 32.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-31 141.0 382 31.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.6e-31 140.6 395 31.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.6e-31 140.6 370 32.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.4e-31 140.2 208 42.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.4e-31 139.8 393 31.0
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 4.4e-31 139.8 399 33.1
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.7e-31 139.4 429 32.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 7.5e-31 139.0 398 30.9
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.7e-31 138.7 401 31.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.3e-30 138.3 398 31.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-30 138.3 283 36.0
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.8e-30 137.1 253 36.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-30 136.7 228 40.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.7e-30 136.7 410 29.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.8e-30 136.3 393 32.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 8.3e-30 135.6 419 31.3
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.1e-29 135.2 385 33.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-29 134.8 267 36.7
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.8e-29 134.4 221 38.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.4e-29 134.0 398 31.9
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.4e-29 134.0 227 41.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.1e-29 133.7 229 40.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.1e-29 133.3 399 31.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 5.3e-29 132.9 244 35.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.1e-29 132.1 389 30.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.6e-28 131.3 388 29.6
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.0e-28 131.0 388 31.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.7e-28 130.6 395 30.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.5e-28 130.2 254 35.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.5e-28 130.2 210 37.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 4.5e-28 129.8 227 39.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 4.5e-28 129.8 408 30.4
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.5e-28 129.8 383 31.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 5.9e-28 129.4 385 30.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.0e-27 128.6 368 32.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.3e-27 128.3 394 31.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-27 127.5 210 41.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 3.8e-27 126.7 227 40.5
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.0e-27 126.3 432 31.0
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.1e-26 125.2 364 33.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-26 125.2 354 31.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.9e-26 124.4 233 36.5
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-26 124.0 233 36.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.5e-26 124.0 233 36.5
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.5e-26 124.0 245 37.6
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.5e-26 124.0 213 37.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.5e-26 124.0 207 39.6
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.2e-26 123.6 241 38.6
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.2e-26 123.2 227 39.2
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.2e-26 123.2 391 30.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.5e-26 122.9 220 38.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.5e-26 122.9 236 37.3
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 7.2e-26 122.5 241 38.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 7.2e-26 122.5 361 33.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.2e-25 121.7 379 29.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-25 121.3 244 33.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.1e-25 120.9 213 35.7
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.1e-25 120.9 358 30.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.6e-25 120.2 209 37.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.7e-25 119.8 216 36.6
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-25 119.4 214 39.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.0e-24 118.6 255 33.7
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.3e-24 117.5 213 39.0
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.0e-24 117.1 211 35.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.0e-24 117.1 211 35.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 3.0e-24 117.1 207 36.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 8.8e-24 115.5 215 39.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.8e-23 112.1 214 36.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-22 111.7 401 27.4
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.3e-22 111.7 239 33.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-22 111.3 224 33.5
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 2.8e-22 110.5 401 27.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.8e-22 110.5 246 33.7
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.8e-22 110.5 218 39.4
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.7e-22 110.2 207 35.3
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.3e-22 109.4 246 35.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.3e-22 109.0 234 31.6
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.1e-21 107.1 211 35.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.1e-21 107.1 270 35.2
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.1e-21 107.1 221 34.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 5.4e-21 106.3 305 28.2
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.5e-20 103.6 211 35.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.5e-20 103.6 211 35.1
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 5.9e-20 102.8 392 27.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.7e-20 102.4 210 33.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.3e-19 101.7 264 32.6
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.7e-19 101.3 222 35.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.9e-18 97.8 398 28.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 4.2e-18 96.7 225 33.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 8.0e-17 92.4 381 26.5
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.0e-16 90.5 146 34.9
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.4e-15 87.0 156 37.8
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.4e-15 87.0 156 37.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-14 84.7 163 35.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.3e-14 82.8 137 39.4
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.1e-13 80.1 139 41.0
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.8e-08 64.7 278 29.5
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 6.8e-08 62.8 47 53.2
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 8.3e-06 55.8 51 43.1


User provided reference genes

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