Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.1e-262 909.4 469 100.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 6.2e-165 584.7 457 68.9
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 2.6e-163 579.3 465 66.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.5e-163 578.6 470 67.4
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 6.4e-162 574.7 445 68.3
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.1e-161 573.9 446 68.6
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 6.0e-160 568.2 443 70.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 7.9e-160 567.8 432 68.3
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.8e-159 566.6 418 72.5
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.3e-159 566.2 442 69.0
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.0e-159 565.8 418 72.5
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.1e-159 565.1 417 71.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 8.7e-159 564.3 442 67.9
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 8.7e-159 564.3 449 67.0
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-158 563.9 438 69.9
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.9e-158 563.1 445 66.3
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 7.4e-158 561.2 435 68.7
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 7.4e-158 561.2 435 70.1
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.1e-157 559.7 452 66.6
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 4.8e-157 558.5 451 66.7
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.3e-156 555.1 473 64.1
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 6.9e-156 554.7 432 68.3
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 9.0e-156 554.3 436 67.2
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.2e-155 553.9 440 68.9
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.0e-155 553.1 450 66.9
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 2.6e-155 552.7 481 62.6
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.6e-155 552.7 446 67.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 3.4e-155 552.4 440 67.5
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 5.8e-155 551.6 437 68.4
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 5.8e-155 551.6 443 66.1
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 5.8e-155 551.6 427 69.8
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.0e-154 550.8 450 66.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.3e-154 550.4 445 66.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 1.7e-154 550.1 459 64.7
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-154 550.1 421 69.1
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-154 550.1 427 68.6
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.7e-154 550.1 437 68.4
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.9e-154 549.3 449 65.5
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.9e-154 549.3 422 70.6
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.9e-154 549.3 411 70.3
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.9e-154 549.3 441 67.1
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.8e-154 548.9 440 68.4
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.8e-154 548.9 450 66.2
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.5e-154 548.1 422 69.4
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 6.5e-154 548.1 428 68.5
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 8.4e-154 547.7 449 65.7
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.4e-153 547.0 429 69.0
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 5.5e-153 545.0 438 67.1
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.2e-152 543.9 420 68.8
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.6e-152 543.5 429 66.9
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.1e-152 543.1 437 67.5
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-152 542.3 450 66.0
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-152 542.3 450 66.0
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 6.0e-152 541.6 442 67.9
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 7.9e-152 541.2 431 68.0
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.3e-151 540.4 439 66.1
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.1e-151 538.5 434 66.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 7.4e-150 534.6 429 68.1
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.8e-149 532.7 472 63.6
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.8e-149 532.7 452 63.5
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 3.7e-149 532.3 521 58.2
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-148 530.8 438 66.9
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.1e-148 530.8 423 67.8
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.1e-148 530.8 443 65.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.4e-148 529.6 426 67.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-148 529.6 433 66.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 5.3e-148 528.5 445 64.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 9.0e-148 527.7 472 63.1
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-147 527.3 451 65.2
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.0e-147 526.6 482 61.6
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.0e-147 526.6 430 66.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.0e-146 524.2 418 66.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 5.0e-146 521.9 438 65.1
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 5.5e-145 518.5 437 62.9
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.2e-144 517.3 443 63.7
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.1e-144 516.5 445 65.2
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.4e-143 513.8 446 62.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.3e-143 513.1 438 63.9
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.3e-143 513.1 438 63.9
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 3.9e-143 512.3 451 62.5
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.1e-143 511.9 436 64.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 9.7e-142 507.7 426 64.1
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.8e-141 505.4 424 66.0
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.1e-140 504.2 407 65.6
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.4e-140 503.8 456 61.8
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.4e-140 503.1 562 53.4
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-139 500.4 433 61.4
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 4.5e-139 498.8 433 61.4
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 7.7e-139 498.0 434 61.3
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.0e-138 497.7 434 62.0
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.0e-138 497.7 434 62.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 9.4e-137 491.1 457 60.6
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 3.0e-135 486.1 424 62.3
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.7e-133 480.3 398 65.3
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.7e-133 479.2 458 59.8
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 3.7e-133 479.2 447 60.6
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.2e-133 478.0 400 65.2
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.0e-130 471.1 462 59.7
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.8e-130 469.2 461 58.6
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.1e-129 467.6 425 60.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.5e-129 466.5 530 51.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 7.2e-129 464.9 418 60.0
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.1e-128 463.4 407 60.2
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.0e-126 456.8 446 59.0
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.6e-126 456.4 425 59.8
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 5.7e-126 455.3 368 65.8
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.3e-125 451.8 407 59.0
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.2e-125 451.4 407 58.2
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 9.4e-121 438.0 415 59.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 5.2e-119 432.2 380 61.8
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.5e-118 430.6 370 64.6
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 2.8e-117 426.4 432 56.9
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.7e-117 426.0 421 57.0
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.8e-117 425.6 413 59.3
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.0e-114 417.9 424 56.8
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.2e-114 416.8 236 87.7
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 2.9e-114 416.4 389 60.9
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.2e-113 412.5 420 55.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-112 410.2 372 58.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 9.1e-108 394.8 363 59.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.5e-105 386.7 377 57.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 8.0e-104 381.7 377 56.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 9.2e-100 368.2 388 53.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 5.9e-99 365.5 387 54.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.4e-95 354.4 383 51.4
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.7e-93 347.4 578 40.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 5.2e-87 325.9 356 50.6
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-86 323.9 407 48.9
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.9e-84 317.4 299 59.9
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 7.8e-83 312.0 338 55.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.2e-80 304.7 328 53.7
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.6e-78 297.0 370 48.6
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.2e-71 272.7 317 51.7
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 7.1e-68 262.3 286 51.4
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 3.9e-66 256.5 299 48.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.9e-65 254.2 292 51.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.7e-59 233.8 121 92.6
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 8.7e-58 228.8 252 53.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.1e-55 221.9 246 55.3
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 8.1e-48 195.7 332 36.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.2e-43 181.8 103 83.5
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.1e-43 181.0 116 82.8
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-40 171.4 153 65.4
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 5.0e-37 159.8 157 62.4
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.1e-36 158.7 199 46.7
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.3e-34 151.0 100 81.0
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 3.0e-26 124.0 102 63.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 4.3e-25 120.2 151 51.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 4.3e-25 120.2 71 83.1
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.1e-23 114.0 66 89.4
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.0e-22 111.3 72 72.2
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-21 107.8 64 81.2
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.1e-20 105.5 58 87.9
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.2e-20 103.6 70 68.6
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 2.1e-19 101.3 69 69.6
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.3e-17 94.0 64 68.8
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 5.7e-17 93.2 62 75.8
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.1e-15 89.0 51 76.5
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.6e-14 84.3 75 53.3
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.5e-14 83.6 72 63.9
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.5e-14 83.6 51 74.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 7.7e-14 82.8 64 70.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-13 81.3 51 72.5
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.5e-13 79.7 55 67.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.9e-12 78.2 107 44.9
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.2e-11 75.5 51 68.6
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.4e-10 72.0 125 37.6
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.1e-09 68.9 52 67.3
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.6e-09 67.8 81 55.6
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 4.8e-08 63.5 36 86.1
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 6.3e-08 63.2 71 50.7
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.3e-08 63.2 41 70.7
CsaV3_6G014150 Cucumis sativus L. HOM05D003179 ORTHO05D003563 3.1e-07 60.8 310 22.3
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 4.1e-07 60.5 332 21.4
MELO3C026918.2 Cucumis melo HOM05D003179 ORTHO05D003563 4.1e-07 60.5 310 21.9
Nn7g36373 Nelumbo nucifera HOM05D003179 ORTHO05D003563 2.7e-06 57.8 316 22.8
BcaC01g01987 Brassica carinata HOM05D003179 ORTHO05D003563 7.7e-06 56.2 308 21.8


User provided reference genes

Program Settings