Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 3.8e-188 661.4 342 100.0
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.0e-116 424.1 290 76.6
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 3.9e-116 422.2 290 76.2
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 8.7e-116 421.0 307 71.7
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-115 420.6 290 76.2
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.5e-115 420.2 287 75.3
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.9e-115 419.9 287 75.3
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 2.5e-115 419.5 288 75.3
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 3.3e-115 419.1 288 76.4
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 4.3e-115 418.7 297 73.7
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 7.4e-115 417.9 305 70.5
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 9.6e-115 417.5 287 74.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 9.6e-115 417.5 290 74.5
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.3e-114 417.2 284 76.8
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 1.6e-114 416.8 284 74.6
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 1.6e-114 416.8 287 74.9
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 2.1e-114 416.4 296 73.6
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 3.7e-114 415.6 291 73.5
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 3.7e-114 415.6 290 74.5
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 3.7e-114 415.6 284 75.7
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 6.2e-114 414.8 290 74.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 8.1e-114 414.5 290 74.5
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 8.1e-114 414.5 299 72.9
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 1.1e-113 414.1 290 74.5
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.1e-113 414.1 291 73.9
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.4e-113 413.7 290 75.2
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.8e-113 413.3 293 74.1
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 2.4e-113 412.9 287 73.9
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 2.4e-113 412.9 287 73.9
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 2.4e-113 412.9 287 73.9
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 3.1e-113 412.5 297 73.4
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 3.1e-113 412.5 290 74.1
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 4.0e-113 412.1 288 74.0
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 5.3e-113 411.8 287 73.2
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 5.3e-113 411.8 289 74.0
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 6.9e-113 411.4 318 69.2
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.2e-112 410.6 302 71.5
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.2e-112 410.6 291 73.5
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.5e-112 410.2 302 70.9
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.0e-112 409.8 289 73.0
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 2.0e-112 409.8 302 71.2
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.6e-112 409.5 290 74.5
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.6e-112 409.5 297 72.1
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 2.6e-112 409.5 288 74.0
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 3.4e-112 409.1 299 71.6
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 3.4e-112 409.1 281 76.2
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 4.5e-112 408.7 289 74.0
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.5e-112 408.7 288 73.3
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.8e-112 408.3 287 73.9
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 5.8e-112 408.3 282 75.2
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 5.8e-112 408.3 292 74.3
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 5.8e-112 408.3 291 72.9
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 7.6e-112 407.9 287 73.9
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 7.6e-112 407.9 299 72.2
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 1.3e-111 407.1 287 72.8
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.3e-111 407.1 291 73.2
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.3e-111 407.1 293 73.7
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.7e-111 406.8 291 71.5
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.2e-111 406.4 291 73.5
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.2e-111 406.4 291 73.5
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 2.9e-111 406.0 287 73.2
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 3.8e-111 405.6 291 71.5
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 4.9e-111 405.2 291 73.2
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 4.9e-111 405.2 290 73.4
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 6.4e-111 404.8 291 73.2
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 6.4e-111 404.8 291 73.2
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 6.4e-111 404.8 291 73.2
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 8.4e-111 404.4 291 73.2
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 8.4e-111 404.4 281 74.0
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.1e-110 404.1 293 72.7
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-110 404.1 291 72.9
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.4e-110 403.7 298 71.5
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 1.4e-110 403.7 287 73.2
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.4e-110 403.7 291 72.2
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 4.2e-110 402.1 290 72.8
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.2e-109 400.6 317 68.1
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 2.1e-109 399.8 291 71.5
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 2.1e-109 399.8 328 66.8
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 4.6e-109 398.7 293 72.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 4.6e-109 398.7 291 71.1
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 6.0e-109 398.3 291 69.8
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.8e-108 396.7 286 70.3
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 3.0e-108 396.0 291 71.1
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 3.0e-108 396.0 251 80.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 5.1e-108 395.2 281 72.2
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 6.7e-108 394.8 290 72.8
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.1e-107 394.0 292 70.2
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.5e-107 393.7 289 73.4
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 7.4e-107 391.3 291 69.1
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 7.4e-107 391.3 284 70.8
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 8.2e-106 387.9 289 70.9
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.1e-105 387.5 290 70.0
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.8e-105 386.7 290 72.1
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.4e-105 386.3 281 70.8
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 9.0e-105 384.4 288 68.4
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 4.2e-102 375.6 275 70.9
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 5.5e-102 375.2 290 69.0
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 3.0e-100 369.4 285 67.4
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 3.9e-100 369.0 282 68.8
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 4.3e-99 365.5 246 76.0
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 7.4e-99 364.8 247 76.5
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.8e-97 360.1 261 73.9
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 3.1e-97 359.4 250 74.8
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 6.9e-97 358.2 246 76.8
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.9e-94 350.1 250 72.4
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.2e-93 347.4 282 63.8
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 8.8e-92 341.3 238 73.9
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 4.2e-86 322.4 194 82.5
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 7.4e-83 311.6 209 76.1
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 8.2e-82 308.1 224 68.8
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.8e-81 307.0 248 60.9
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 4.1e-81 305.8 291 59.5
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.4e-76 290.8 243 62.6
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.8e-73 280.4 231 65.8
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 7.7e-72 275.0 254 55.1
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 9.7e-67 258.1 242 58.3
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 4.0e-60 236.1 176 67.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.2e-51 208.0 179 64.2
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 1.5e-51 207.6 155 69.7
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 2.7e-48 196.8 201 56.2
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 1.0e-44 184.9 115 80.0
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 2.6e-43 180.3 109 78.9
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.1e-41 174.9 132 72.0
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 2.4e-41 173.7 133 68.4
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 8.3e-34 148.7 106 71.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 3.0e-31 140.2 104 72.1
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 7.3e-30 135.6 250 36.4
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 3.6e-29 133.3 249 35.7
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 4.4e-27 126.3 162 51.2
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.9e-26 123.6 104 64.4
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.1e-25 121.7 106 66.0
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 8.6e-23 112.1 201 36.8
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.4e-20 104.0 176 41.5
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 5.8e-19 99.4 153 41.8
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 8.4e-18 95.5 241 29.5
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.2e-17 93.2 67 73.1
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 5.4e-17 92.8 50 86.0
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 3.3e-14 83.6 69 68.1


User provided reference genes

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