Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.9e-30 133.7 61 100.0
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 6.7e-19 96.7 50 86.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.5e-18 95.5 58 74.1
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.9e-18 95.1 61 72.1
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.3e-17 92.4 58 74.1
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.6e-17 92.0 61 70.5
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.6e-17 92.0 61 68.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.6e-17 92.0 61 68.9
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.6e-17 92.0 58 70.7
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.2e-17 91.7 58 72.4
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 2.2e-17 91.7 61 68.9
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.2e-17 91.7 61 68.9
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.2e-17 91.7 61 68.9
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 2.2e-17 91.7 61 70.5
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 2.2e-17 91.7 60 71.7
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 2.8e-17 91.3 61 70.5
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 2.8e-17 91.3 59 71.2
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 3.7e-17 90.9 61 70.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 4.8e-17 90.5 61 68.9
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.8e-17 90.5 58 69.0
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 6.3e-17 90.1 56 73.2
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 6.3e-17 90.1 61 68.9
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 6.3e-17 90.1 54 74.1
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 8.2e-17 89.7 58 72.4
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 8.2e-17 89.7 57 70.2
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 8.2e-17 89.7 59 69.5
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 8.2e-17 89.7 59 69.5
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 8.2e-17 89.7 61 68.9
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.1e-16 89.4 61 65.6
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.1e-16 89.4 58 70.7
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.1e-16 89.4 61 67.2
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.1e-16 89.4 59 69.5
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.1e-16 89.4 59 71.2
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 1.4e-16 89.0 58 72.4
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 2.4e-16 88.2 61 67.2
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 2.4e-16 88.2 59 69.5
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.1e-16 87.8 56 71.4
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 3.1e-16 87.8 58 70.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 3.1e-16 87.8 61 67.2
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 4.1e-16 87.4 56 69.6
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 4.1e-16 87.4 56 67.9
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 4.1e-16 87.4 59 67.8
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 5.3e-16 87.0 57 71.9
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 5.3e-16 87.0 59 67.8
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 5.3e-16 87.0 61 65.6
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 5.3e-16 87.0 61 65.6
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 6.9e-16 86.7 54 72.2
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 6.9e-16 86.7 59 66.1
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.9e-16 86.7 59 69.5
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 6.9e-16 86.7 61 65.6
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 6.9e-16 86.7 54 70.4
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.0e-16 86.3 57 70.2
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.2e-15 85.9 57 68.4
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.2e-15 85.9 57 68.4
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-15 85.9 59 67.8
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 1.5e-15 85.5 61 63.9
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.5e-15 85.5 61 63.9
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.5e-15 85.5 56 67.9
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.5e-15 85.5 59 67.8
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.5e-15 85.5 61 65.6
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.5e-15 85.5 61 65.6
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.5e-15 85.5 61 65.6
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 1.5e-15 85.5 57 70.2
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.5e-15 85.5 57 66.7
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 2.0e-15 85.1 58 67.2
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.0e-15 85.1 61 65.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.0e-15 85.1 57 68.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 2.0e-15 85.1 57 68.4
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.6e-15 84.7 54 70.4
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.6e-15 84.7 48 77.1
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 3.4e-15 84.3 59 66.1
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.4e-15 84.3 61 63.9
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.4e-15 84.3 61 63.9
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 3.4e-15 84.3 59 66.1
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 3.4e-15 84.3 59 66.1
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 3.4e-15 84.3 48 75.0
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.4e-15 84.3 59 67.8
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 3.4e-15 84.3 47 74.5
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.5e-15 84.0 57 66.7
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 4.5e-15 84.0 50 76.0
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 5.9e-15 83.6 58 67.2
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 5.9e-15 83.6 59 64.4
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 5.9e-15 83.6 48 77.1
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 5.9e-15 83.6 53 71.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.7e-15 83.2 61 63.9
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 7.7e-15 83.2 57 70.2
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 7.7e-15 83.2 57 70.2
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 7.7e-15 83.2 57 70.2
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.0e-14 82.8 58 65.5
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.0e-14 82.8 49 75.5
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.3e-14 82.4 48 75.0
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.3e-14 82.4 58 67.2
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.3e-14 82.4 54 68.5
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-14 82.4 48 75.0
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-14 82.4 48 75.0
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 1.7e-14 82.0 47 74.5
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.7e-14 82.0 47 74.5
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 2.2e-14 81.6 58 60.3
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.2e-14 81.6 59 64.4
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.2e-14 81.6 59 66.1
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.2e-14 81.6 47 76.6
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 2.2e-14 81.6 47 74.5
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.9e-14 81.3 54 68.5
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.8e-14 80.9 57 63.2
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 3.8e-14 80.9 48 70.8
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 3.8e-14 80.9 53 69.8
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 3.8e-14 80.9 44 81.8
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 5.0e-14 80.5 49 73.5
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 6.5e-14 80.1 46 78.3
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.5e-14 80.1 47 74.5
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.5e-14 80.1 46 78.3
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-13 79.3 57 63.2
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.1e-13 79.3 57 63.2
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.4e-13 79.0 47 74.5
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.4e-13 79.0 59 64.4
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.9e-13 78.6 58 63.8
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 1.9e-13 78.6 46 76.1
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.9e-13 78.6 59 61.0
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 3.2e-13 77.8 46 76.1
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 3.2e-13 77.8 46 73.9
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 7.2e-13 76.6 51 62.7
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 7.2e-13 76.6 59 62.7
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 7.2e-13 76.6 46 73.9
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 7.2e-13 76.6 46 73.9
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 7.2e-13 76.6 43 76.7
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 9.4e-13 76.3 47 72.3
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 9.4e-13 76.3 47 72.3
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 9.4e-13 76.3 47 72.3
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 9.4e-13 76.3 47 72.3
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 9.4e-13 76.3 47 72.3
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 9.4e-13 76.3 46 71.7
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 9.4e-13 76.3 48 72.9
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 9.4e-13 76.3 46 73.9
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.6e-12 75.5 46 71.7
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.6e-12 75.5 54 61.1
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.6e-12 75.5 46 73.9
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.1e-12 75.1 45 71.1
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 2.1e-12 75.1 50 64.0
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 2.7e-12 74.7 46 73.9
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.6e-12 73.9 46 69.6
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.3e-11 71.6 51 62.7
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 4.8e-09 63.9 33 84.8
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-08 62.8 35 77.1
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.0e-06 56.2 58 53.4


User provided reference genes

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