Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019912 Vanilla planifolia HOM05D000083 ORTHO05D002968 3.8e-114 414.8 209 100.0
MBI17_g05012_MAGBIO Magnolia biondii HOM05D000083 ORTHO05D002968 1.9e-17 93.6 252 34.5
TAR365G0072 Trochodendron aralioides HOM05D000083 ORTHO05D002968 4.3e-17 92.4 256 35.2
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.3e-16 90.9 253 34.8
TAR362G1169 Trochodendron aralioides HOM05D001643 ORTHO05D001580 2.8e-16 89.7 253 34.8
GSVIVG01017915001 Vitis vinifera HOM05D000083 ORTHO05D002968 2.8e-16 89.7 249 30.9
Nn4g26244 Nelumbo nucifera HOM05D000083 ORTHO05D002968 4.8e-16 89.0 244 34.4
QL03p006971 Quercus lobata HOM05D000083 ORTHO05D002968 4.8e-16 89.0 255 33.7
Prupe.6G326300 Prunus persica HOM05D000083 ORTHO05D002968 2.4e-15 86.7 256 33.6
Dinv23943 Davidia involucrata HOM05D000083 ORTHO05D002968 5.3e-15 85.5 250 33.6
RcHm_v2.0_Chr3g0454721 Rosa chinensis HOM05D000083 ORTHO05D002968 5.3e-15 85.5 254 32.3
Thecc.04G226000 Theobroma cacao HOM05D000083 ORTHO05D002968 5.3e-15 85.5 253 32.0
Duzib128G1208 Durio zibethinus HOM05D000083 ORTHO05D002968 6.9e-15 85.1 200 36.0
Thecc.05G303900 Theobroma cacao HOM05D000083 ORTHO05D002968 9.0e-15 84.7 198 35.9
Manes.03G182000 Manihot esculenta HOM05D000083 ORTHO05D002968 1.2e-14 84.3 258 32.6
VMungo0540G2103 Vigna mungo HOM05D000083 ORTHO05D002968 1.2e-14 84.3 247 32.0
Atru.chr2.411 Acer truncatum HOM05D000083 ORTHO05D002968 1.5e-14 84.0 233 33.5
Aqoxy5G00507 Aquilegia oxysepala HOM05D000083 ORTHO05D002968 1.5e-14 84.0 252 32.9
Glyma.03G237600 Glycine max HOM05D000083 ORTHO05D002968 3.4e-14 82.8 257 30.7
Prupe.1G154200 Prunus persica HOM05D000083 ORTHO05D002968 3.4e-14 82.8 244 32.4
Lj1g0001062 Lotus japonicus HOM05D000083 ORTHO05D002968 7.6e-14 81.6 249 31.7
QL06p003640 Quercus lobata HOM05D000083 ORTHO05D002968 7.6e-14 81.6 253 32.0
CiPaw.02G094300 Carya illinoinensis HOM05D000083 ORTHO05D002968 1.7e-13 80.5 249 33.7
Glyma.19G235200 Glycine max HOM05D000083 ORTHO05D002968 1.7e-13 80.5 257 30.4
COL.COLO4_13476 Corchorus olitorius HOM05D000083 ORTHO05D002968 2.2e-13 80.1 199 35.2
Zm00001eb179120 Zea mays HOM05D000083 ORTHO05D002968 2.2e-13 80.1 225 33.3
Cfa006588 Carpinus fangiana HOM05D000987 ORTHO05D002968 2.9e-13 79.7 259 32.0
ATR0757G090 Amborella trichopoda HOM05D000083 ORTHO05D002968 3.8e-13 79.3 263 29.7
arahy.Tifrunner.gnm1.ann1.GPD3EK Arachis hypogaea HOM05D000083 ORTHO05D002968 5.0e-13 79.0 250 30.4
TPR.G33178 Trifolium pratense HOM05D000083 ORTHO05D002968 5.0e-13 79.0 259 29.3
CDE07G1669 Ceratophyllum demersum HOM05D000083 ORTHO05D002968 6.5e-13 78.6 246 32.9
Cfa015606 Carpinus fangiana HOM05D000083 ORTHO05D002968 8.4e-13 78.2 264 31.4
CiPaw.07G017500 Carya illinoinensis HOM05D000083 ORTHO05D002968 8.4e-13 78.2 259 31.3
FvH4_6g05800 Fragaria vesca HOM05D000083 ORTHO05D002968 1.9e-12 77.0 253 32.0
FAN05G2297 Fragaria x ananassa HOM05D000083 ORTHO05D002968 1.9e-12 77.0 254 32.3
FAN14G2684 Fragaria x ananassa HOM05D000083 ORTHO05D002968 1.9e-12 77.0 253 32.0
FAN14G4962 Fragaria x ananassa HOM05D000083 ORTHO05D002968 1.9e-12 77.0 253 32.0
TAR636G3174 Trochodendron aralioides HOM05D000083 ORTHO05D002968 1.9e-12 77.0 220 33.6
Dinv44501 Davidia involucrata HOM05D000083 ORTHO05D002968 2.5e-12 76.6 256 32.8
FAN02G4338 Fragaria x ananassa HOM05D000083 ORTHO05D002968 2.5e-12 76.6 240 32.5
Gohir.A11G264700 Gossypium hirsutum HOM05D000083 ORTHO05D002968 2.5e-12 76.6 191 35.6
Gohir.D11G274900 Gossypium hirsutum HOM05D000083 ORTHO05D002968 2.5e-12 76.6 189 35.4
Gorai.007G296700 Gossypium raimondii HOM05D000083 ORTHO05D002968 2.5e-12 76.6 191 35.6
Cc11_g03550 Coffea canephora HOM05D000083 ORTHO05D002968 3.2e-12 76.3 249 29.7
Os08g0421800 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D002968 3.2e-12 76.3 224 30.8
THA.LOC104805874 Tarenaya hassleriana HOM05D000083 ORTHO05D002968 3.2e-12 76.3 244 32.8
Duzib151G1213 Durio zibethinus HOM05D000083 ORTHO05D002968 5.5e-12 75.5 253 30.8
FAN05G0044 Fragaria x ananassa HOM05D000083 ORTHO05D002968 5.5e-12 75.5 253 32.0
Medtr7g113490 Medicago truncatula HOM05D000083 ORTHO05D002968 5.5e-12 75.5 249 32.9
Psat0s212g0080 Pisum sativum HOM05D000083 ORTHO05D002968 5.5e-12 75.5 247 33.2
MD16G1187200 Malus domestica HOM05D000083 ORTHO05D002968 7.1e-12 75.1 240 32.1
arahy.Tifrunner.gnm1.ann1.TET457 Arachis hypogaea HOM05D000083 ORTHO05D002968 9.3e-12 74.7 196 34.2
Ciclev10004485m.g Citrus clementina HOM05D000083 ORTHO05D002968 9.3e-12 74.7 229 32.3
AL1G19430 Arabidopsis lyrata HOM05D000083 ORTHO05D002968 1.2e-11 74.3 243 30.5
Manes.08G120900 Manihot esculenta HOM05D000083 ORTHO05D002968 1.6e-11 73.9 193 34.2
Phvul.006G091500 Phaseolus vulgaris HOM05D000083 ORTHO05D002968 1.6e-11 73.9 251 29.9
GSVIVG01000047001 Vitis vinifera HOM05D000083 ORTHO05D002968 2.1e-11 73.6 195 35.4
DCAR_029414 Daucus carota HOM05D000083 ORTHO05D002968 3.5e-11 72.8 245 34.3
FAN09G2552 Fragaria x ananassa HOM05D000083 ORTHO05D002968 3.5e-11 72.8 256 31.6
Lj6A596G8 Lonicera japonica HOM05D000083 ORTHO05D002968 3.5e-11 72.8 253 30.8
AT1G09000 Arabidopsis thaliana HOM05D000083 ORTHO05D002968 4.6e-11 72.4 230 31.7
MD13G1186500 Malus domestica HOM05D000083 ORTHO05D002968 4.6e-11 72.4 244 31.6
Oeu029585.1 Olea europaea HOM05D000083 ORTHO05D002968 4.6e-11 72.4 246 30.5
TWI12G0225 Tripterygium wilfordii HOM05D000083 ORTHO05D002968 4.6e-11 72.4 220 31.8
Potri.008G149500 Populus trichocarpa HOM05D000083 ORTHO05D002968 6.1e-11 72.0 259 31.3
TWI09G0549 Tripterygium wilfordii HOM05D000083 ORTHO05D002968 6.1e-11 72.0 261 31.8
BcaC05g24751 Brassica carinata HOM05D000083 ORTHO05D002968 1.0e-10 71.2 243 31.3
C05p07030 Brassica napus HOM05D000083 ORTHO05D002968 1.0e-10 71.2 243 31.3
BolC5t29458H Brassica oleracea HOM05D000083 ORTHO05D002968 1.0e-10 71.2 243 31.3
Cpa.g.sc888.1 Carica papaya HOM05D000083 ORTHO05D002968 1.0e-10 71.2 251 31.1
ClCG06G005950 Citrullus lanatus HOM05D000083 ORTHO05D002968 1.0e-10 71.2 212 30.7
Os09g0383300 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D002968 1.0e-10 71.2 241 30.3
Haze_00939 Corylus avellana HOM05D000083 ORTHO05D002968 1.8e-10 70.5 266 31.6
Sp1g07610 Schrenkiella parvula HOM05D000083 ORTHO05D002968 1.8e-10 70.5 232 30.6
MSTRG.21839 Avicennia marina HOM05D000083 ORTHO05D002968 2.3e-10 70.1 249 30.5
Haze_04199 Corylus avellana HOM05D000083 ORTHO05D002968 2.3e-10 70.1 260 31.9
FAN12G2790 Fragaria x ananassa HOM05D000083 ORTHO05D002968 2.3e-10 70.1 253 29.6
Hma1.2p1_0995F.1_g245710 Hydrangea macrophylla HOM05D000083 ORTHO05D002968 2.3e-10 70.1 247 30.0
PGR031G3825 Punica granatum HOM05D000083 ORTHO05D002968 2.3e-10 70.1 252 33.3
BcaB07g34117 Brassica carinata HOM05D000083 ORTHO05D002968 3.9e-10 69.3 200 33.5
Migut.N00162 Erythranthe guttata HOM05D000083 ORTHO05D002968 3.9e-10 69.3 240 28.3
CANSAT54G2374 Cannabis sativa HOM05D000083 ORTHO05D002968 5.1e-10 68.9 256 31.2
Thhalv10006999m.g Eutrema salsugineum HOM05D000083 ORTHO05D002968 5.1e-10 68.9 242 30.2
Sopen01g031510 Solanum pennellii HOM05D000083 ORTHO05D002968 5.1e-10 68.9 247 32.0
TWI56G1161 Tripterygium wilfordii HOM05D000083 ORTHO05D002968 5.1e-10 68.9 221 31.7
CsaV3_6G038320 Cucumis sativus L. HOM05D000083 ORTHO05D002968 8.7e-10 68.2 212 32.5
Hma1.2p1_0928F.1_g237800 Hydrangea macrophylla HOM05D000083 ORTHO05D002968 8.7e-10 68.2 244 30.3
Solyc01g079750.3 Solanum lycopersicum HOM05D000083 ORTHO05D002968 8.7e-10 68.2 249 32.1
Cc03_g03360 Coffea canephora HOM05D000083 ORTHO05D002968 1.1e-09 67.8 258 31.0
TAR629G1971 Trochodendron aralioides HOM05D000083 ORTHO05D002968 1.1e-09 67.8 209 33.5
A06p05820 Brassica napus HOM05D000083 ORTHO05D002968 1.5e-09 67.4 243 31.3
BraA06t23792Z Brassica rapa HOM05D000083 ORTHO05D002968 1.5e-09 67.4 243 31.3
MD12G1219600 Malus domestica HOM05D000083 ORTHO05D002968 1.5e-09 67.4 245 29.4
Actinidia05705 Actinidia chinensis HOM05D000083 ORTHO05D002968 1.9e-09 67.0 190 31.6
Aa31LG2G11710 Aethionema arabicum HOM05D000083 ORTHO05D002968 2.5e-09 66.6 223 29.1
MD04G1205500 Malus domestica HOM05D000083 ORTHO05D002968 2.5e-09 66.6 249 30.1
PSO210G1451 Papaver somniferum HOM05D000083 ORTHO05D002968 2.5e-09 66.6 251 31.9
Carub.0002s0824 Capsella rubella HOM05D000083 ORTHO05D002968 3.3e-09 66.2 231 30.3
ClCG02G015820 Citrullus lanatus HOM05D000083 ORTHO05D002968 3.3e-09 66.2 239 29.7
AT1G54960 Arabidopsis thaliana HOM05D000083 ORTHO05D002968 4.3e-09 65.9 234 32.1
Sed0005769 Sechium edule HOM05D000083 ORTHO05D002968 4.3e-09 65.9 219 29.7
CANSAT78G2019 Cannabis sativa HOM05D000083 ORTHO05D002968 5.7e-09 65.5 267 30.3
ECA236G1854 Erigeron canadensis HOM05D000083 ORTHO05D002968 5.7e-09 65.5 243 30.9
Manes.09G166800 Manihot esculenta HOM05D000083 ORTHO05D002968 5.7e-09 65.5 192 33.3
Potri.013G022700 Populus trichocarpa HOM05D000083 ORTHO05D002968 5.7e-09 65.5 243 30.0
RcHm_v2.0_Chr4g0417171 Rosa chinensis HOM05D000083 ORTHO05D002968 5.7e-09 65.5 244 31.1
Potri.010G092000 Populus trichocarpa HOM05D000083 ORTHO05D002968 7.4e-09 65.1 257 29.6
Atru.chr4.2525 Acer truncatum HOM05D000083 ORTHO05D002968 9.7e-09 64.7 257 31.5
Peaxi162Scf00037g00328 Petunia axillaris HOM05D000141 ORTHO05D002968 9.7e-09 64.7 188 31.4
Actinidia23498 Actinidia chinensis HOM05D000083 ORTHO05D002968 1.3e-08 64.3 262 30.5
MELO3C014496.2 Cucumis melo HOM05D000083 ORTHO05D002968 1.3e-08 64.3 213 31.5
Oeu029311.3 Olea europaea HOM05D000083 ORTHO05D002968 1.3e-08 64.3 238 28.6
Ah.04g154380 Amaranthus hybridus HOM05D000083 ORTHO05D002968 1.6e-08 63.9 239 28.9
CAN.G1034.9 Capsicum annuum HOM05D000083 ORTHO05D002968 1.6e-08 63.9 237 29.5
Gorai.006G052900 Gossypium raimondii HOM05D000083 ORTHO05D002968 1.6e-08 63.9 249 30.1
PSO832G3027 Papaver somniferum HOM05D000083 ORTHO05D002968 1.6e-08 63.9 258 32.6
Dinv40285 Davidia involucrata HOM05D000083 ORTHO05D002968 2.2e-08 63.5 170 31.2
CsaV3_2G005240 Cucumis sativus L. HOM05D000083 ORTHO05D002968 2.8e-08 63.2 239 31.0
Gohir.A09G055300 Gossypium hirsutum HOM05D000083 ORTHO05D002968 2.8e-08 63.2 249 29.3
Gohir.D09G054200 Gossypium hirsutum HOM05D000083 ORTHO05D002968 2.8e-08 63.2 249 29.7
Sopen01g042540 Solanum pennellii HOM05D000083 ORTHO05D002968 2.8e-08 63.2 242 31.0
AL1G65470 Arabidopsis lyrata HOM05D000083 ORTHO05D002968 3.7e-08 62.8 233 30.9
CSS0038764 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D002968 3.7e-08 62.8 198 32.8
Sed0023188 Sechium edule HOM05D000083 ORTHO05D002968 3.7e-08 62.8 239 30.1
Hund12170 Selenicereus undatus HOM05D000083 ORTHO05D002968 3.7e-08 62.8 228 28.9
THA.LOC104823731 Tarenaya hassleriana HOM05D000083 ORTHO05D002968 3.7e-08 62.8 190 32.6
Nn4g22891 Nelumbo nucifera HOM05D000083 ORTHO05D002968 4.8e-08 62.4 131 37.4
Aa31sc136G50 Aethionema arabicum HOM05D000083 ORTHO05D002968 6.3e-08 62.0 231 28.6
Ciclev10000482m.g Citrus clementina HOM05D000083 ORTHO05D002968 6.3e-08 62.0 187 31.6
Lsat_1_v5_gn_9_85980 Lactuca sativa HOM05D000083 ORTHO05D002968 8.2e-08 61.6 180 31.1
Sabra05G0035500 Salix brachista HOM05D000083 ORTHO05D002968 8.2e-08 61.6 183 33.3
Eucgr.H04486 Eucalyptus grandis HOM05D000083 ORTHO05D002968 1.1e-07 61.2 195 33.8
PGSC0003DMG400008997 Solanum tuberosum HOM05D000083 ORTHO05D002968 1.1e-07 61.2 189 32.3
CSS0013539 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D002968 1.4e-07 60.8 254 30.7
CSS0047251 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D002968 1.4e-07 60.8 260 30.8
Actinidia40161 Actinidia chinensis HOM05D000083 ORTHO05D002968 1.8e-07 60.5 191 30.9
MSTRG.4009 Avicennia marina HOM05D000083 ORTHO05D002968 1.8e-07 60.5 249 28.5
Cpa.g.sc48.46 Carica papaya HOM05D000083 ORTHO05D002968 1.8e-07 60.5 183 33.3
Migut.G00311 Erythranthe guttata HOM05D000083 ORTHO05D002968 1.8e-07 60.5 251 29.9
Glyma.10G250800 Glycine max HOM05D000083 ORTHO05D002968 1.8e-07 60.5 208 28.8
Lalb_Chr02g0148221 Lupinus albus HOM05D000083 ORTHO05D002968 1.8e-07 60.5 244 29.9
COL.COLO4_05831 Corchorus olitorius HOM05D000083 ORTHO05D002968 2.4e-07 60.1 232 31.5
Thhalv10023309m.g Eutrema salsugineum HOM05D000083 ORTHO05D002968 2.4e-07 60.1 189 32.8
FvH4_4g14910 Fragaria vesca HOM05D000083 ORTHO05D002968 4.1e-07 59.3 224 30.4
DCAR_024594 Daucus carota HOM05D000083 ORTHO05D002968 5.3e-07 58.9 250 28.4
PGSC0003DMG400018992 Solanum tuberosum HOM05D000083 ORTHO05D002968 5.3e-07 58.9 252 31.7
Nitab4.5_0009539g0010 Nicotiana tabacum HOM05D000083 ORTHO05D002968 6.9e-07 58.5 258 30.2
Potri.005G033400 Populus trichocarpa HOM05D000083 ORTHO05D002968 6.9e-07 58.5 190 33.2
PSO302G0033 Papaver somniferum HOM05D000083 ORTHO05D002968 9.0e-07 58.2 208 30.8
Ca_10969_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.2e-06 57.8 227 30.0
Sc19g0004380 Simmondsia chinensis HOM05D000083 ORTHO05D002968 1.2e-06 57.8 243 28.8
CARHR284470 Cardamine hirsuta HOM05D000083 ORTHO05D002968 1.5e-06 57.4 221 28.5
HanXRQChr02g0046141 Helianthus annuus HOM05D000083 ORTHO05D002968 1.5e-06 57.4 232 34.1
Zm00001eb099000 Zea mays HOM05D000083 ORTHO05D002968 1.5e-06 57.4 216 31.0
Zm00001eb311780 Zea mays HOM05D000083 ORTHO05D002968 2.6e-06 56.6 210 32.4
MELO3C004269.2 Cucumis melo HOM05D000083 ORTHO05D002968 4.5e-06 55.8 233 29.2
Duzib052G0580 Durio zibethinus HOM05D000083 ORTHO05D002968 4.5e-06 55.8 212 33.0
Carub.0001s0832 Capsella rubella HOM05D000083 ORTHO05D002968 5.9e-06 55.5 209 28.7
Psat6g209240 Pisum sativum HOM05D000083 ORTHO05D002968 7.7e-06 55.1 233 27.9
TPR.G5477 Trifolium pratense HOM05D000083 ORTHO05D002968 1.0e-05 54.7 230 30.0


User provided reference genes

Program Settings