Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 0.0e+00 1123.6 565 100.0
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.1e-228 795.8 493 82.8
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 4.2e-208 728.4 517 67.1
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.4e-206 723.4 490 68.8
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.0e-206 722.2 488 69.3
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 5.1e-206 721.5 490 69.2
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 5.7e-205 718.0 490 69.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 6.3e-204 714.5 496 67.9
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 1.8e-203 713.0 495 68.9
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 4.1e-203 711.8 507 67.7
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 6.9e-203 711.1 504 66.7
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 1.2e-202 710.3 479 69.1
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 4.5e-202 708.4 518 65.1
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 4.5e-202 708.4 492 67.1
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 4.5e-202 708.4 461 70.9
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 5.9e-202 708.0 508 66.9
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 7.7e-202 707.6 497 67.4
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.0e-201 707.2 455 71.2
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.0e-201 707.2 485 68.9
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 1.0e-201 707.2 493 68.8
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 6.5e-201 704.5 504 67.7
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 9.4e-200 700.7 510 66.1
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 1.4e-198 696.8 518 63.9
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 5.2e-198 694.9 462 70.6
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 6.7e-198 694.5 500 65.8
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 2.6e-197 692.6 458 70.5
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 7.4e-197 691.0 500 66.4
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 1.3e-196 690.3 469 68.9
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.7e-196 689.9 495 65.3
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.8e-196 689.1 490 66.5
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 6.3e-196 688.0 462 69.3
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 4.1e-195 685.3 450 69.1
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 4.1e-195 685.3 427 74.5
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 5.3e-195 684.9 511 64.6
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 1.6e-194 683.3 487 64.9
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 5.9e-194 681.4 470 67.9
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 5.0e-193 678.3 505 64.2
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 8.5e-193 677.6 507 62.9
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.1e-192 677.2 514 62.3
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 3.2e-192 675.6 477 66.7
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.2e-192 675.6 515 62.1
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 4.2e-192 675.2 523 63.5
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 5.5e-192 674.9 495 64.6
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 9.4e-192 674.1 511 64.2
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 2.7e-191 672.5 495 64.2
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 2.7e-191 672.5 488 64.8
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 4.7e-191 671.8 502 64.1
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 6.1e-191 671.4 500 64.4
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.0e-190 670.6 497 64.0
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 2.3e-190 669.5 492 64.0
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 4.0e-190 668.7 536 60.1
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 4.0e-190 668.7 536 60.1
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 8.8e-190 667.5 463 66.7
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.4e-189 665.2 500 64.4
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.3e-188 663.7 506 63.6
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.7e-188 663.3 504 62.9
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 2.2e-188 662.9 482 64.3
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 8.2e-188 661.0 500 62.0
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.8e-187 659.8 445 67.9
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.4e-187 659.4 464 65.1
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 3.1e-187 659.1 482 63.7
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 4.1e-187 658.7 475 65.1
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 2.0e-186 656.4 488 62.9
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 5.9e-186 654.8 482 62.4
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 1.7e-185 653.3 465 64.5
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 6.5e-185 651.4 525 60.2
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.5e-184 649.4 505 63.8
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 1.2e-183 647.1 484 63.0
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 2.3e-182 642.9 434 67.1
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.8e-180 636.0 538 59.7
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 5.4e-179 631.7 431 68.9
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 7.0e-179 631.3 419 71.1
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.2e-178 630.6 506 62.3
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.5e-176 622.9 560 56.4
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 3.2e-176 622.5 508 59.1
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 5.5e-176 621.7 482 62.2
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 9.5e-176 620.9 435 64.6
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 5.2e-174 615.1 476 61.1
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 2.0e-173 613.2 453 61.8
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 4.1e-171 605.5 501 60.1
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.9e-170 601.7 526 56.7
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.3e-169 600.5 518 58.1
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 1.7e-169 600.1 427 63.7
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 1.7e-169 600.1 478 59.8
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 3.8e-169 599.0 427 63.7
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 3.3e-168 595.9 478 59.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 4.3e-168 595.5 489 57.5
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 4.3e-168 595.5 489 57.5
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 2.8e-167 592.8 520 56.3
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 8.0e-167 591.3 433 62.4
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 2.3e-166 589.7 438 62.1
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 5.7e-165 585.1 438 61.4
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 2.9e-164 582.8 490 56.1
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 3.7e-164 582.4 456 60.7
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 4.1e-163 578.9 435 61.1
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 9.2e-163 577.8 469 57.6
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 2.8e-159 566.2 495 54.5
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 1.7e-153 547.0 476 55.7
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 4.6e-146 522.3 461 53.8
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.2e-140 503.4 360 65.8
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 1.3e-137 494.2 492 52.0
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 2.1e-135 486.9 480 53.5
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.5e-91 339.3 268 63.8
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.8e-60 236.9 161 64.0
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 1.4e-54 218.4 450 31.8
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 1.5e-51 208.4 148 65.5
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.6e-45 188.3 281 40.2
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 8.6e-44 182.6 126 69.8
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 6.6e-36 156.4 105 63.8
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 7.1e-30 136.3 252 38.5
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.1e-27 129.0 93 60.2
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.9e-27 128.3 138 47.8
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 4.3e-27 127.1 163 44.2
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 1.6e-26 125.2 142 52.8
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 3.6e-26 124.0 163 43.6
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.8e-23 114.0 104 55.8
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 7.8e-21 106.3 61 77.0
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.9e-15 87.8 323 25.1
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 3.2e-14 84.3 190 36.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 3.2e-14 84.3 386 23.6
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 7.1e-14 83.2 339 23.9
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.6e-13 82.0 247 25.5
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 2.7e-13 81.3 248 24.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.7e-13 81.3 257 26.1
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.6e-13 80.5 331 23.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 6.0e-13 80.1 300 24.7
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 7.8e-13 79.7 321 23.1
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.0e-12 79.3 248 25.4
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.3e-12 79.0 255 23.5
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.7e-12 78.6 256 25.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.3e-12 78.2 336 22.0
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.3e-12 78.2 250 26.0
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.9e-12 77.4 330 23.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 5.1e-12 77.0 267 27.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 8.7e-12 76.3 271 24.7
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 8.7e-12 76.3 321 23.4
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.5e-11 75.5 331 22.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.5e-11 74.7 249 26.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.3e-11 74.3 242 24.0
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 4.3e-11 73.9 247 24.3
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 5.6e-11 73.6 321 22.7
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 7.3e-11 73.2 336 22.3
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 9.6e-11 72.8 342 24.3
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.1e-09 69.3 212 24.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.4e-09 68.9 331 22.7
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.4e-09 68.9 252 25.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.8e-09 68.6 241 26.6
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.4e-09 68.2 294 26.2
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.1e-09 67.8 255 26.7
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 5.3e-09 67.0 238 24.8
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.9e-09 66.6 223 26.5
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 9.0e-09 66.2 189 25.9
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.2e-08 65.9 317 22.7
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.6e-08 64.7 134 29.1
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 4.5e-08 63.9 48 58.3
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 5.8e-08 63.5 41 70.7
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 5.8e-08 63.5 183 25.7
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.9e-08 62.8 256 23.0
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 2.2e-07 61.6 282 23.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 3.8e-07 60.8 249 21.7
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 8.4e-07 59.7 131 29.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.1e-06 59.3 184 26.1
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.4e-06 58.9 103 34.0
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.9e-06 58.5 63 49.2
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 4.2e-06 57.4 224 24.1
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 4.2e-06 57.4 242 22.3


User provided reference genes

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