Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.2e-194 680.6 347 100.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.8e-113 413.3 353 61.5
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 9.1e-113 411.0 355 59.7
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 4.5e-112 408.7 354 61.6
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 7.7e-112 407.9 353 60.1
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.2e-111 406.4 353 59.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 8.5e-111 404.4 353 58.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.5e-110 403.7 353 59.2
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.2e-110 402.5 352 59.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 3.6e-109 399.1 354 58.5
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.1e-109 398.3 355 58.3
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.0e-109 397.9 358 58.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.0e-109 397.9 358 58.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.3e-108 396.4 354 57.9
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 4.0e-108 395.6 350 59.4
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.5e-107 393.7 354 57.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.0e-107 393.3 354 57.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.0e-107 393.3 353 58.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.6e-107 392.9 354 59.3
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.4e-107 392.5 355 56.6
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.8e-106 388.7 353 57.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-105 387.5 360 57.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-105 387.5 360 57.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.4e-105 387.1 353 58.4
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.8e-105 386.7 353 56.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.1e-105 385.6 359 56.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.1e-105 384.4 353 55.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.6e-104 383.6 353 59.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-104 382.5 353 56.1
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 5.9e-104 381.7 351 57.5
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 5.9e-104 381.7 353 56.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 5.9e-104 381.7 354 57.1
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 7.7e-104 381.3 354 58.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.0e-103 380.9 354 57.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.7e-103 380.2 353 56.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.3e-103 379.8 353 56.4
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 3.8e-103 379.0 353 56.4
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-103 379.0 352 57.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.6e-103 377.9 353 55.8
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.1e-102 377.5 354 55.4
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.5e-102 376.3 356 57.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.3e-102 375.9 352 55.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 3.3e-102 375.9 355 57.2
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 5.5e-102 375.2 351 56.1
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 7.2e-102 374.8 354 55.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 9.5e-102 374.4 350 57.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.2e-101 374.0 349 56.4
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 3.6e-101 372.5 356 55.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.6e-101 372.5 355 55.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.6e-101 372.5 350 56.0
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 4.7e-101 372.1 355 56.9
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.0e-100 370.9 354 55.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.4e-100 370.5 351 55.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.3e-100 369.8 351 55.6
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.0e-100 369.4 353 56.4
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 5.2e-100 368.6 332 56.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 4.4e-99 365.5 352 55.4
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.4e-99 365.5 350 55.1
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 7.5e-99 364.8 350 55.1
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 9.8e-99 364.4 357 55.7
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.8e-98 362.8 346 56.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.8e-98 362.8 350 54.6
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.9e-98 362.1 357 53.8
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 6.3e-98 361.7 357 53.5
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 8.3e-98 361.3 355 53.5
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 8.3e-98 361.3 355 55.2
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.1e-97 360.9 350 54.3
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.4e-97 360.5 350 56.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.2e-97 359.4 354 52.3
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 4.1e-97 359.0 353 53.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 9.2e-97 357.8 359 53.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.5e-96 355.5 341 55.7
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 5.9e-96 355.1 359 54.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.0e-95 354.4 358 53.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.7e-95 353.6 352 52.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-95 353.2 358 52.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.3e-95 353.2 358 52.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 6.6e-95 351.7 354 54.0
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.9e-94 350.1 355 52.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.5e-94 349.7 360 53.3
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.5e-94 349.7 355 52.1
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.6e-94 348.6 359 52.9
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.6e-93 347.1 353 52.1
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.6e-93 345.9 355 51.5
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 4.7e-93 345.5 358 52.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 6.1e-93 345.1 356 51.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 8.9e-92 341.3 355 49.9
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.6e-91 339.7 355 51.3
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 3.4e-91 339.3 342 53.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-91 339.0 353 52.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.8e-91 337.8 353 52.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-90 337.4 353 52.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-90 336.7 320 55.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.2e-90 336.7 338 54.4
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.2e-90 336.7 340 53.5
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.9e-90 336.3 353 52.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.9e-90 335.5 353 52.4
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.1e-89 334.3 324 55.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.9e-89 333.6 351 50.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.4e-89 333.2 359 50.7
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.0e-87 325.5 359 49.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-86 323.6 354 51.1
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.7e-85 318.9 350 49.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 2.8e-77 293.1 352 46.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.2e-76 288.9 357 45.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.5e-75 287.3 302 50.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.3e-74 281.6 357 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 5.1e-71 272.3 346 42.2
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.2e-69 267.7 313 50.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 8.1e-69 265.0 350 43.7
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.4e-67 259.2 232 56.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.3e-63 247.7 347 40.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 5.1e-63 245.7 344 43.0
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.5e-62 243.4 373 40.2
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.2e-59 234.6 349 39.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.2e-59 234.6 237 54.9
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.6e-56 224.2 233 50.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-53 213.0 282 42.2
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-48 197.6 282 45.0
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.1e-48 197.2 264 43.9
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-47 194.5 205 52.2
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 9.0e-44 181.8 302 38.4
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.6e-43 180.3 302 38.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-39 167.5 180 51.7
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.3e-31 140.6 112 61.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.5e-30 137.9 166 47.6
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-30 137.9 123 56.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-30 137.5 149 50.3
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.9e-30 137.5 218 39.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 3.4e-27 126.7 112 58.0
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-25 120.6 105 56.2
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.7e-22 109.4 195 37.9
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 3.7e-21 106.7 115 48.7
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.2e-21 105.5 104 50.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 8.2e-21 105.5 379 26.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-20 105.1 97 53.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 4.1e-20 103.2 97 54.6
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 2.2e-18 97.4 353 25.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 6.5e-18 95.9 87 58.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.2e-16 91.7 77 51.9
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.7e-10 71.2 174 31.0
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 6.1e-08 62.8 58 55.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 8.8e-07 58.9 200 28.5
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.0e-06 57.8 87 34.5
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.7e-06 56.2 54 40.7


User provided reference genes

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