Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.5e-242 842.4 411 100.0
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.8e-123 446.8 341 64.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.4e-120 437.2 340 63.8
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 7.0e-120 434.9 311 68.2
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.0e-119 433.3 340 62.6
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.5e-119 432.6 344 63.1
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.9e-119 431.8 342 62.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 2.2e-118 429.9 348 62.1
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 3.2e-117 426.0 310 66.1
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 7.2e-117 424.9 310 67.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 7.2e-117 424.9 310 67.7
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-116 424.1 307 66.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.1e-116 423.3 345 61.2
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.0e-116 421.4 342 61.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.0e-116 421.4 337 62.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.4e-115 420.6 311 67.5
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.4e-115 420.6 310 64.8
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.3e-115 419.9 303 66.3
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.3e-115 419.9 351 59.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.3e-115 419.9 310 64.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.3e-115 419.9 314 65.9
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 3.0e-115 419.5 347 61.1
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 3.0e-115 419.5 311 65.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.2e-115 418.7 307 65.5
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 5.2e-115 418.7 307 66.8
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.2e-114 417.5 307 66.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-114 417.2 302 66.9
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.0e-114 416.8 339 63.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.6e-114 416.4 343 60.6
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.6e-114 416.4 327 60.9
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 7.5e-114 414.8 313 64.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 9.8e-114 414.5 311 65.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.3e-113 414.1 299 65.6
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.8e-113 412.9 340 60.9
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-113 412.9 310 65.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.8e-113 412.9 297 67.0
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 4.9e-113 412.1 320 63.4
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-112 411.0 310 62.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-112 411.0 299 65.2
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.4e-112 410.6 299 67.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.8e-112 410.2 324 63.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.8e-112 410.2 313 64.5
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.8e-112 410.2 350 60.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.8e-112 410.2 307 64.5
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.4e-112 409.8 304 65.1
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.4e-112 409.8 327 62.7
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.1e-112 409.1 311 63.3
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.1e-112 409.1 311 63.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.2e-111 407.5 311 63.0
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-111 407.5 307 64.5
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.0e-111 406.8 299 64.5
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-111 406.4 311 62.7
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-111 406.4 306 64.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.7e-111 406.4 310 63.9
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.5e-111 406.0 299 64.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.5e-111 406.0 299 64.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.9e-111 405.2 299 64.5
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.0e-110 404.4 325 60.6
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.3e-110 404.1 292 67.1
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.7e-110 403.7 335 58.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 2.3e-110 403.3 299 65.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.9e-110 402.9 332 60.8
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.8e-110 402.5 328 59.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 6.6e-110 401.7 307 62.5
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.6e-110 401.7 336 58.9
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 8.6e-110 401.4 300 66.3
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.9e-109 400.2 328 59.5
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.9e-109 400.2 307 62.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.5e-109 399.8 302 63.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.5e-109 399.8 299 65.2
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.5e-109 399.8 314 62.1
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.5e-109 399.8 346 59.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.3e-109 399.4 306 62.1
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 3.3e-109 399.4 307 63.8
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.6e-109 398.7 299 63.2
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-108 397.5 311 62.4
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.6e-108 397.1 311 61.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.1e-108 396.7 304 63.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 3.6e-108 396.0 336 61.0
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.7e-108 395.6 339 58.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 8.0e-108 394.8 299 64.5
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.0e-107 392.5 306 61.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.0e-107 392.5 294 64.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.2e-107 392.1 327 58.4
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 6.8e-107 391.7 315 61.3
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 6.8e-107 391.7 313 62.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.2e-106 391.0 308 62.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.0e-106 390.2 314 62.4
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.0e-106 390.2 294 64.3
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 7.5e-106 388.3 301 62.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 7.5e-106 388.3 299 62.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.3e-105 387.5 299 62.9
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.7e-105 387.1 304 61.8
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 2.9e-105 386.3 300 62.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 2.9e-105 386.3 300 62.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 2.9e-105 386.3 300 62.0
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.4e-105 385.2 304 60.9
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.8e-104 383.6 292 62.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.8e-104 383.6 304 61.5
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 4.1e-104 382.5 304 60.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.4e-104 382.1 313 62.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 7.0e-104 381.7 300 60.7
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 7.0e-104 381.7 299 61.9
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 7.0e-104 381.7 303 60.4
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.2e-103 380.9 292 62.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.2e-103 380.9 302 62.9
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.6e-103 380.6 300 60.7
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.7e-103 379.8 304 59.2
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 5.9e-103 378.6 339 55.2
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 5.9e-103 378.6 300 62.3
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-102 377.5 300 60.3
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-102 377.5 349 55.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.3e-102 376.7 349 55.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.9e-102 375.9 304 60.9
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.0e-102 375.6 304 59.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.6e-101 372.1 395 50.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 9.5e-101 371.3 300 59.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.2e-100 370.9 268 68.3
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.1e-100 370.2 349 54.4
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.8e-100 369.8 343 54.2
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.3e-99 366.7 262 69.1
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-98 364.0 300 59.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.0e-98 363.6 386 51.3
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.6e-98 363.2 300 58.7
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.6e-98 363.2 307 57.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 5.8e-98 362.1 329 56.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.7e-97 359.4 300 58.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 6.4e-97 358.6 297 57.6
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 8.3e-97 358.2 300 58.3
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 4.6e-95 352.4 260 66.9
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.9e-94 349.4 342 53.8
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.3e-93 345.9 269 63.6
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 2.8e-92 343.2 271 62.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.4e-91 340.9 461 42.7
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.7e-89 332.8 300 58.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.2e-84 317.8 311 51.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 6.2e-84 315.5 302 51.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 8.9e-83 311.6 302 51.3
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.5e-82 310.8 308 48.1
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.6e-79 300.8 311 48.6
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.3e-77 293.1 300 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.7e-73 280.8 302 49.0
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.5e-71 273.1 269 54.6
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.3e-68 264.6 311 45.0
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.8e-65 253.1 196 61.7
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.8e-59 234.2 215 57.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.8e-57 226.5 163 66.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.9e-47 192.2 151 58.9
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.8e-38 164.5 99 78.8
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.2e-36 155.6 109 67.9
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.1e-35 155.2 213 38.5
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.3e-30 137.5 155 49.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 9.7e-29 132.1 113 63.7
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.8e-28 130.6 108 63.9
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-24 118.2 83 62.7
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.0e-22 112.1 113 50.4
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.1e-19 100.5 194 35.1
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.3e-17 95.1 88 56.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-15 88.2 110 50.9
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.6e-15 87.0 72 59.7
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 8.0e-15 85.9 71 63.4
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.0e-14 85.5 81 50.6
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-11 74.3 47 72.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-11 73.9 97 43.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.5e-08 65.1 45 68.9
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 2.1e-07 61.2 70 41.4
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 8.0e-07 59.3 39 66.7
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 5.2e-06 56.6 74 37.8
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 8.8e-06 55.8 36 63.9


User provided reference genes

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