Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.4e-141 507.7 516 100.0
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 3.6e-33 147.5 181 47.0
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 3.9e-32 144.1 205 42.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 8.8e-32 142.9 186 42.5
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 5.7e-31 140.2 217 40.6
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 7.4e-31 139.8 179 43.6
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 7.4e-31 139.8 186 41.9
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.7e-30 138.7 200 40.5
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.4e-29 134.8 237 38.4
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.4e-29 134.8 237 38.4
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 2.4e-29 134.8 186 41.9
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 5.3e-29 133.7 193 40.9
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 7.0e-29 133.3 193 40.4
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 9.1e-29 132.9 194 40.2
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 9.1e-29 132.9 209 40.2
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.2e-28 132.5 196 39.3
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.0e-28 131.7 193 38.3
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 2.6e-28 131.3 232 34.9
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 3.5e-28 131.0 177 41.8
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 1.0e-27 129.4 183 41.5
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.3e-27 129.0 200 38.5
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 1.7e-27 128.6 182 41.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.7e-27 128.6 210 38.6
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 1.7e-27 128.6 183 41.0
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.2e-27 128.3 217 38.2
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.9e-27 127.9 237 35.9
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 3.8e-27 127.5 207 38.6
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 5.0e-27 127.1 185 41.1
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.1e-26 125.9 187 39.0
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.5e-26 125.6 183 41.5
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 9.4e-26 122.9 184 39.7
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 2.7e-25 121.3 184 39.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 3.6e-25 120.9 226 36.3
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.8e-24 118.6 187 35.8
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 4.0e-24 117.5 225 33.8
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 4.0e-24 117.5 201 37.3
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 5.2e-24 117.1 186 38.2
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 8.8e-24 116.3 226 33.2
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 8.8e-24 116.3 208 34.6
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 1.2e-23 115.9 171 39.8
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-23 115.9 177 41.2
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 2.0e-23 115.2 218 36.7
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 3.3e-23 114.4 200 37.0
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 3.3e-23 114.4 187 36.4
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 5.7e-23 113.6 186 38.7
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 5.7e-23 113.6 183 37.2
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 7.5e-23 113.2 218 36.2
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 9.7e-23 112.8 183 36.6
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 1.3e-22 112.5 234 33.8
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.7e-22 112.1 218 37.6
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.7e-22 112.1 218 37.6
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.7e-22 112.1 218 37.6
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 2.8e-22 111.3 202 35.6
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 3.7e-22 110.9 150 40.7
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 4.8e-22 110.5 173 38.7
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 8.2e-22 109.8 217 35.5
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 8.2e-22 109.8 217 35.5
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.1e-21 109.4 197 35.5
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 1.4e-21 109.0 200 34.0
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 2.4e-21 108.2 236 34.3
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 3.1e-21 107.8 232 32.8
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 4.1e-21 107.5 182 37.4
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 5.3e-21 107.1 170 37.6
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 9.1e-21 106.3 191 31.9
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 4.5e-20 104.0 188 35.1
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 4.5e-20 104.0 184 38.0
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 7.7e-20 103.2 168 38.7
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 1.0e-19 102.8 170 37.6
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 2.2e-19 101.7 177 38.4
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.9e-19 101.3 166 38.0
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 3.8e-19 100.9 165 39.4
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 5.0e-19 100.5 216 31.0
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 5.0e-19 100.5 167 35.9
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 6.5e-19 100.1 196 32.1
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.5e-19 100.1 181 34.8
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 8.5e-19 99.8 160 38.1
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 8.5e-19 99.8 167 38.3
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.5e-18 98.2 166 37.3
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 9.4e-18 96.3 181 34.3
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 2.1e-17 95.1 157 37.6
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 6.1e-17 93.6 162 36.4
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 2.0e-15 88.6 212 31.1
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 3.4e-15 87.8 184 32.6
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 4.4e-15 87.4 180 30.6
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 3.7e-14 84.3 210 28.1
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 6.3e-14 83.6 167 34.7
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.6e-12 79.0 173 32.4
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 2.0e-12 78.6 207 28.0
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 2.7e-12 78.2 149 32.9
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 2.7e-12 78.2 71 50.7
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.7e-12 78.2 62 58.1
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 3.5e-12 77.8 184 31.5
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 1.3e-11 75.9 172 33.1
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 2.9e-11 74.7 174 35.1
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 3.8e-11 74.3 174 32.2
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 2.5e-10 71.6 174 32.2
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.2e-10 71.2 237 29.5
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 5.5e-10 70.5 48 62.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.5e-10 70.5 193 28.5
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 9.5e-10 69.7 172 32.0
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 9.5e-10 69.7 172 32.0
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.2e-09 69.3 57 52.6
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 3.6e-09 67.8 180 31.7
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 4.7e-09 67.4 56 51.8
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 6.1e-09 67.0 176 31.2
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.1e-09 67.0 175 31.4
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.1e-09 67.0 175 31.4
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 6.1e-09 67.0 180 30.6
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 6.1e-09 67.0 176 30.1
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 1.0e-08 66.2 168 29.8
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 2.3e-08 65.1 174 32.8
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 5.2e-08 63.9 176 31.2
CARHR106300 Cardamine hirsuta HOM05D007675 ORTHO05D009699 8.8e-08 63.2 190 29.5
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 8.8e-08 63.2 172 31.4
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.5e-07 62.4 186 25.3
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 1.5e-07 62.4 171 26.9
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.5e-07 62.4 171 32.7
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 1.5e-07 62.4 45 57.8
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 2.0e-07 62.0 176 30.7
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 2.0e-07 62.0 176 30.7
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 2.0e-07 62.0 93 40.9
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 2.6e-07 61.6 172 30.8
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.6e-07 61.6 170 27.1
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 3.4e-07 61.2 47 53.2
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 5.7e-07 60.5 177 31.6
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 5.7e-07 60.5 155 29.0
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 5.7e-07 60.5 174 32.2
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 5.7e-07 60.5 196 31.6
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 7.5e-07 60.1 168 31.5
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 7.5e-07 60.1 47 51.1
Sabra11G0002200 Salix brachista HOM05D002890 ORTHO05D009847 7.5e-07 60.1 170 27.6
Sabra11G0002700 Salix brachista HOM05D002890 ORTHO05D009847 7.5e-07 60.1 170 27.6
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 7.5e-07 60.1 172 30.2
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 7.5e-07 60.1 172 30.2
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 9.8e-07 59.7 45 53.3
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 1.3e-06 59.3 47 51.1
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 1.3e-06 59.3 47 53.2
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 1.3e-06 59.3 157 31.2
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 1.7e-06 58.9 165 29.1
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 2.2e-06 58.5 171 29.2
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 2.2e-06 58.5 174 31.0
Sabra11G0001800 Salix brachista HOM05D002890 ORTHO05D009847 2.2e-06 58.5 170 27.1
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 3.7e-06 57.8 53 45.3
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 4.9e-06 57.4 168 31.0
CDE04G1316 Ceratophyllum demersum HOM05D007675 ORTHO05D009699 6.3e-06 57.0 195 26.2
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 6.3e-06 57.0 173 28.3
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.3e-06 57.0 125 32.0


User provided reference genes

Program Settings