Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.6e-101 372.9 196 100.0
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 7.0e-70 267.7 172 74.4
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 7.8e-69 264.2 188 68.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.9e-68 261.9 171 76.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.5e-67 260.0 171 71.3
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.9e-67 259.6 186 71.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.9e-67 259.6 193 67.4
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.5e-67 259.2 190 68.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.3e-67 258.5 190 67.4
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.6e-67 258.1 192 65.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 7.3e-67 257.7 193 68.4
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-66 256.9 194 65.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.1e-66 256.1 193 66.8
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.1e-66 256.1 168 71.4
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.7e-66 255.0 182 70.9
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.1e-66 254.2 172 72.7
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 8.1e-66 254.2 173 71.1
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.8e-65 253.1 179 68.2
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.3e-65 252.7 199 64.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.3e-65 252.7 173 72.8
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.0e-65 251.9 190 65.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.8e-65 251.1 171 71.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.8e-65 251.1 172 70.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-64 250.4 193 66.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.2e-64 250.4 172 69.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 166 75.3
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 188 66.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 3.4e-64 248.8 191 67.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.4e-64 248.4 172 70.3
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 5.8e-64 248.1 177 70.6
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.7e-63 246.5 180 65.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.7e-63 246.5 187 65.8
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.9e-63 245.7 173 69.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.9e-63 245.7 186 65.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 3.7e-63 245.4 193 64.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.4e-63 244.6 167 69.5
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.4e-63 244.6 173 71.1
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 6.4e-63 244.6 172 69.2
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 8.3e-63 244.2 185 67.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.4e-62 243.4 191 66.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.4e-62 243.4 196 61.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 202 61.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.4e-62 242.7 193 63.2
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.2e-62 242.3 191 66.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.2e-62 242.3 173 71.1
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.2e-62 242.3 188 66.5
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.2e-62 242.3 193 63.7
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.4e-62 241.5 172 69.8
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 7.1e-62 241.1 200 64.0
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 7.1e-62 241.1 200 64.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 7.1e-62 241.1 201 61.7
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.1e-62 241.1 190 62.1
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 9.2e-62 240.7 186 65.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.6e-61 240.0 190 63.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.6e-61 240.0 188 63.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-61 239.6 173 66.5
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.7e-61 239.2 191 64.4
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.7e-61 239.2 193 61.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.7e-61 239.2 190 63.7
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.7e-61 239.2 179 65.9
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.7e-61 239.2 176 65.9
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.6e-61 238.4 176 64.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 7.8e-61 237.7 171 67.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 7.8e-61 237.7 185 62.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 7.8e-61 237.7 172 66.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.8e-61 237.7 171 69.6
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.3e-60 236.9 185 62.2
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.3e-60 236.9 169 69.2
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.7e-60 236.5 200 62.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.3e-60 236.1 167 67.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.3e-60 236.1 210 58.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.3e-60 236.1 196 63.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.0e-60 235.7 193 62.7
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.0e-60 235.7 179 65.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.9e-60 235.3 171 67.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.9e-60 235.3 197 61.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.9e-60 235.3 197 61.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 5.1e-60 235.0 198 59.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 8.6e-60 234.2 172 66.9
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 8.6e-60 234.2 197 61.4
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.5e-59 233.4 177 66.7
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.9e-59 233.0 190 65.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.9e-59 233.0 190 65.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.5e-59 232.6 172 65.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.5e-59 232.6 175 68.6
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.5e-59 232.6 175 68.6
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.5e-59 232.6 197 60.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.6e-59 231.5 185 64.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 5.6e-59 231.5 218 57.8
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.3e-59 231.1 161 68.3
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.5e-59 230.7 183 62.8
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.2e-58 230.3 170 69.4
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.2e-58 230.3 150 70.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-58 229.9 184 60.3
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.6e-58 229.9 174 67.8
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.1e-58 229.6 170 66.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.8e-58 229.2 170 67.6
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 6.2e-58 228.0 193 58.5
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 6.2e-58 228.0 177 63.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 6.2e-58 228.0 159 70.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.1e-58 227.6 171 62.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.4e-57 226.9 177 62.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.4e-57 226.9 197 59.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.4e-57 226.1 181 63.5
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 6.8e-57 224.6 166 65.1
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.8e-57 224.6 188 60.6
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.0e-56 223.0 182 61.5
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 3.4e-56 222.2 174 65.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-55 220.3 199 58.3
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.2e-55 219.5 170 64.1
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 6.4e-55 218.0 195 60.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.4e-54 216.9 181 61.3
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.4e-54 216.9 181 61.3
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-53 213.8 197 56.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.5e-53 212.2 210 55.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.5e-53 212.2 169 63.3
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.3e-52 209.5 167 64.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.0e-52 209.1 189 57.7
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 7.3e-51 204.5 169 58.6
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.8e-50 202.6 164 61.0
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.4e-49 199.5 190 56.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.3e-49 198.4 189 58.7
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.9e-49 198.0 141 66.0
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.4e-46 189.5 174 53.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.3e-44 183.0 174 55.2
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.6e-44 181.4 156 59.0
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-43 180.6 166 53.6
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 6.2e-42 174.9 200 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.4e-41 172.9 175 51.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.4e-35 151.4 187 43.3
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.7e-34 149.1 109 66.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 8.1e-34 147.9 187 43.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.4e-33 146.4 101 71.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.3e-33 145.2 168 44.0
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.3e-33 145.2 127 57.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.6e-32 141.4 110 65.5
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 9.9e-32 141.0 101 70.3
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.8e-31 139.0 97 71.1
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.2e-30 135.6 85 70.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 7.1e-30 134.8 93 66.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.5e-29 132.5 139 48.9
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.0e-29 131.7 110 62.7
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.1e-25 119.4 99 60.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 6.5e-23 111.7 98 60.2
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 3.2e-22 109.4 82 64.6
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-17 94.4 79 59.5
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.1e-17 94.4 72 65.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-14 84.0 137 36.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 9.4e-14 81.3 63 66.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 9.4e-14 81.3 136 33.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.2e-10 70.1 76 43.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-09 67.8 66 51.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.1e-09 64.7 98 39.8
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-08 62.0 46 67.4
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.7e-07 60.5 46 63.0
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.5e-07 58.5 63 54.0
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.1e-06 57.8 59 54.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 7.2e-06 55.1 59 52.5


User provided reference genes

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