Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019602 Vanilla planifolia HOM05D003373 ORTHO05D004419 4.9e-122 441.4 268 100.0
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 2.8e-101 372.5 241 94.2
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 2.2e-29 133.7 277 40.4
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 2.7e-27 126.7 263 40.3
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 4.5e-27 125.9 239 46.9
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 1.0e-26 124.8 271 38.4
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 1.3e-26 124.4 265 39.6
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.7e-26 124.0 261 44.1
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.2e-25 119.4 248 37.1
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 5.5e-25 119.0 259 40.2
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 7.2e-25 118.6 193 40.4
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 3.6e-24 116.3 263 39.5
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 4.7e-24 115.9 194 40.7
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 6.1e-24 115.5 239 41.4
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 1.4e-23 114.4 240 41.7
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 3.0e-23 113.2 237 40.9
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 5.2e-23 112.5 189 39.7
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 5.2e-23 112.5 285 37.2
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 6.8e-23 112.1 236 43.6
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 6.8e-23 112.1 241 43.6
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 1.2e-22 111.3 254 43.7
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.5e-22 110.9 332 33.7
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.5e-22 110.9 243 36.2
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 4.4e-22 109.4 267 39.7
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 5.7e-22 109.0 267 42.7
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 7.5e-22 108.6 269 43.5
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.7e-21 107.5 241 42.7
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.2e-21 107.1 239 39.7
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.8e-21 106.7 186 37.1
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 2.8e-21 106.7 265 39.2
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 2.8e-21 106.7 189 40.7
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 4.8e-21 105.9 273 39.2
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 4.8e-21 105.9 265 42.3
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 8.3e-21 105.1 186 39.8
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 8.3e-21 105.1 107 51.4
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 1.1e-20 104.8 264 39.4
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.8e-20 104.0 236 42.4
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 3.1e-20 103.2 268 40.3
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 4.1e-20 102.8 196 41.3
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 7.0e-20 102.1 274 42.3
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 1.2e-19 101.3 262 41.6
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 1.2e-19 101.3 240 43.8
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 1.6e-19 100.9 236 41.9
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 2.7e-19 100.1 240 40.4
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.7e-19 100.1 269 42.4
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 3.5e-19 99.8 235 38.3
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 3.5e-19 99.8 283 41.3
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 4.5e-19 99.4 268 31.7
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 5.9e-19 99.0 263 35.7
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 7.7e-19 98.6 238 33.2
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 1.0e-18 98.2 234 38.5
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 1.3e-18 97.8 183 39.3
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.3e-18 97.8 247 38.9
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 1.3e-18 97.8 271 42.1
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.7e-18 97.4 197 35.5
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 2.3e-18 97.1 238 41.2
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 3.8e-18 96.3 275 38.9
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 3.8e-18 96.3 240 44.6
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 5.0e-18 95.9 98 53.1
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.0e-18 95.9 184 36.4
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 6.6e-18 95.5 246 32.5
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 6.6e-18 95.5 188 40.4
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 6.6e-18 95.5 274 36.9
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 8.6e-18 95.1 184 37.0
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 1.1e-17 94.7 184 38.6
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 1.5e-17 94.4 184 39.1
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 1.5e-17 94.4 81 55.6
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.5e-17 94.4 187 36.4
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 1.9e-17 94.0 233 37.3
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.9e-17 94.0 184 36.4
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.9e-17 94.0 184 36.4
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.9e-17 94.0 188 35.6
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.5e-17 93.6 192 37.0
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.5e-17 93.6 184 36.4
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 4.2e-17 92.8 257 30.0
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 4.2e-17 92.8 270 33.7
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 5.5e-17 92.4 87 50.6
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 5.5e-17 92.4 91 50.5
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 9.5e-17 91.7 182 37.4
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 1.2e-16 91.3 222 39.2
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 2.8e-16 90.1 232 42.7
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 4.7e-16 89.4 232 39.2
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 4.7e-16 89.4 196 37.2
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 6.1e-16 89.0 209 32.5
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 6.1e-16 89.0 273 38.8
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.0e-16 88.6 275 39.6
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 8.0e-16 88.6 275 39.6
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 8.0e-16 88.6 238 41.2
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 8.0e-16 88.6 134 42.5
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.0e-15 88.2 235 35.7
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.0e-15 88.2 267 37.1
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 1.0e-15 88.2 244 32.8
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.4e-15 87.8 235 42.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 1.4e-15 87.8 244 32.8
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 1.8e-15 87.4 239 38.9
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.8e-15 87.4 291 32.3
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 3.0e-15 86.7 286 31.1
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 4.0e-15 86.3 80 55.0
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 4.0e-15 86.3 243 32.9
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 6.8e-15 85.5 87 43.7
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 8.9e-15 85.1 183 36.1
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 8.9e-15 85.1 225 41.3
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 8.9e-15 85.1 85 47.1
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 1.5e-14 84.3 86 53.5
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 1.5e-14 84.3 86 47.7
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 2.0e-14 84.0 241 32.0
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 3.4e-14 83.2 237 36.3
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 4.4e-14 82.8 239 36.0
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 4.4e-14 82.8 103 46.6
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 9.8e-14 81.6 234 38.0
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.3e-13 81.3 190 33.7
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.3e-13 81.3 239 37.2
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 1.3e-13 81.3 185 36.8
TAR622G0335 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.3e-13 81.3 216 32.9
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.7e-13 80.9 184 35.9
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 2.8e-13 80.1 234 38.0
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 3.7e-13 79.7 184 35.3
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 4.9e-13 79.3 188 34.6
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 6.3e-13 79.0 199 33.2
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 6.3e-13 79.0 195 34.4
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 8.3e-13 78.6 149 34.9
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 8.3e-13 78.6 338 32.2
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.4e-12 77.8 234 35.5
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.8e-12 77.4 234 35.5
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.4e-12 77.0 284 35.6
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 2.4e-12 77.0 235 31.5
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 3.2e-12 76.6 238 31.1
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 4.1e-12 76.3 87 42.5
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 4.1e-12 76.3 240 32.1
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 7.0e-12 75.5 95 42.1
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 7.0e-12 75.5 95 42.1
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 9.2e-12 75.1 87 42.5
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.2e-11 74.7 235 31.1
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 1.2e-11 74.7 235 31.1
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.6e-11 74.3 232 29.7
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 2.0e-11 73.9 136 33.8
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 1.0e-10 71.6 67 49.3
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.7e-10 70.9 178 30.3
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 2.3e-10 70.5 274 28.5
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.9e-10 70.1 260 36.5
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.9e-10 70.1 241 32.4
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 3.9e-10 69.7 272 30.1
Prupe.1G265800 Prunus persica HOM05D003373 ORTHO05D004419 4.3e-09 66.2 200 38.5
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 8.0e-08 62.0 104 32.7
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.8e-07 60.8 80 40.0
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 4.0e-07 59.7 79 38.0
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 5.2e-07 59.3 80 38.8
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 5.2e-07 59.3 80 38.8
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 6.8e-07 58.9 215 29.8
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 6.8e-07 58.9 61 45.9
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 8.9e-07 58.5 288 28.5
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.6e-06 57.0 245 29.0
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 7.5e-06 55.5 74 39.2
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 7.5e-06 55.5 74 39.2
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 9.8e-06 55.1 80 36.2


User provided reference genes

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