Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019598 Vanilla planifolia HOM05D000189 ORTHO05D008437 1.3e-63 246.1 119 100.0
MD16G1079700 Malus domestica HOM05D000189 ORTHO05D008437 9.7e-14 80.5 90 48.9
TWI36G0493 Tripterygium wilfordii HOM05D000189 ORTHO05D008437 1.4e-12 76.6 77 48.1
TAR622G0223 Trochodendron aralioides HOM05D000189 ORTHO05D008437 3.1e-12 75.5 62 56.5
Cpa.g.sc1379.3 Carica papaya HOM05D000189 ORTHO05D008437 4.1e-12 75.1 60 61.7
Thhalv10007854m.g Eutrema salsugineum HOM05D000189 ORTHO05D008437 4.1e-12 75.1 63 55.6
CANSAT54G2473 Cannabis sativa HOM05D000189 ORTHO05D008437 6.9e-12 74.3 59 59.3
AL1G38430 Arabidopsis lyrata HOM05D000189 ORTHO05D008437 1.5e-11 73.2 62 53.2
MSTRG.667 Avicennia marina HOM05D000189 ORTHO05D008437 1.5e-11 73.2 95 44.2
Psat2g125440 Pisum sativum HOM05D000189 ORTHO05D008437 2.0e-11 72.8 58 60.3
AT1G27060 Arabidopsis thaliana HOM05D000189 ORTHO05D008437 2.6e-11 72.4 62 53.2
Lalb_Chr17g0340281 Lupinus albus HOM05D000189 ORTHO05D008437 4.5e-11 71.6 66 48.5
TAR374G1725 Trochodendron aralioides HOM05D000189 ORTHO05D008437 4.5e-11 71.6 60 58.3
ATR0665G384 Amborella trichopoda HOM05D000189 ORTHO05D008437 5.9e-11 71.2 58 56.9
BcaB03g11981 Brassica carinata HOM05D000189 ORTHO05D008437 5.9e-11 71.2 56 62.5
Sabra15G0072000 Salix brachista HOM05D000189 ORTHO05D008437 5.9e-11 71.2 69 56.5
Sabra15G0072300 Salix brachista HOM05D000189 ORTHO05D008437 5.9e-11 71.2 69 56.5
Sp1g21720 Schrenkiella parvula HOM05D000189 ORTHO05D008437 5.9e-11 71.2 64 57.8
MELO3C012059.2 Cucumis melo HOM05D000189 ORTHO05D008437 7.7e-11 70.9 64 54.7
Medtr5g038220 Medicago truncatula HOM05D000189 ORTHO05D008437 7.7e-11 70.9 60 58.3
Sabra15G0127500 Salix brachista HOM05D000189 ORTHO05D008437 7.7e-11 70.9 59 59.3
Thecc.02G232400 Theobroma cacao HOM05D000189 ORTHO05D008437 7.7e-11 70.9 73 46.6
Actinidia31173 Actinidia chinensis HOM05D000189 ORTHO05D008437 1.0e-10 70.5 55 61.8
Lj2g0021406 Lotus japonicus HOM05D000189 ORTHO05D008437 1.0e-10 70.5 62 51.6
Sabra15G0129600 Salix brachista HOM05D000189 ORTHO05D008437 1.0e-10 70.5 59 59.3
Aa31LG7G8090 Aethionema arabicum HOM05D000189 ORTHO05D008437 1.3e-10 70.1 71 49.3
Manes.01G191600 Manihot esculenta HOM05D000189 ORTHO05D008437 1.3e-10 70.1 72 52.8
Phvul.002G067400 Phaseolus vulgaris HOM05D000189 ORTHO05D008437 1.3e-10 70.1 57 54.4
Potri.015G107000 Populus trichocarpa HOM05D000189 ORTHO05D008437 1.3e-10 70.1 59 57.6
Prupe.1G267000 Prunus persica HOM05D000189 ORTHO05D008437 1.3e-10 70.1 75 53.3
PGR102G0913 Punica granatum HOM05D000189 ORTHO05D008437 1.3e-10 70.1 61 52.5
BcaC05g26347 Brassica carinata HOM05D000189 ORTHO05D008437 1.7e-10 69.7 56 62.5
CARHR024850 Cardamine hirsuta HOM05D000189 ORTHO05D008437 1.7e-10 69.7 59 59.3
Duzib268G0247 Durio zibethinus HOM05D000189 ORTHO05D008437 2.2e-10 69.3 80 43.8
FAN22G0726 Fragaria x ananassa HOM05D000189 ORTHO05D008437 2.2e-10 69.3 57 57.9
BcaC07g39254 Brassica carinata HOM05D000189 ORTHO05D008437 2.9e-10 68.9 51 60.8
C08p22570 Brassica napus HOM05D000189 ORTHO05D008437 2.9e-10 68.9 51 60.8
BolC8t49894H Brassica oleracea HOM05D000189 ORTHO05D008437 2.9e-10 68.9 51 60.8
CiPaw.06G080200 Carya illinoinensis HOM05D000189 ORTHO05D008437 2.9e-10 68.9 65 50.8
DCAR_031057 Daucus carota HOM05D000189 ORTHO05D008437 2.9e-10 68.9 56 57.1
A08p27720 Brassica napus HOM05D000189 ORTHO05D008437 3.8e-10 68.6 56 60.7
A09p40470 Brassica napus HOM05D000189 ORTHO05D008437 3.8e-10 68.6 56 60.7
BraA08t34707Z Brassica rapa HOM05D000189 ORTHO05D008437 3.8e-10 68.6 56 60.7
Carub.0001s2391 Capsella rubella HOM05D000189 ORTHO05D008437 3.8e-10 68.6 56 62.5
Ciclev10031688m.g Citrus clementina HOM05D000189 ORTHO05D008437 3.8e-10 68.6 56 55.4
RcHm_v2.0_Chr4g0440781 Rosa chinensis HOM05D000189 ORTHO05D008437 3.8e-10 68.6 59 57.6
C05p23710 Brassica napus HOM05D000189 ORTHO05D008437 5.0e-10 68.2 79 50.6
CsaV3_5G032270 Cucumis sativus L. HOM05D000189 ORTHO05D008437 5.0e-10 68.2 64 53.1
Gohir.A05G322800 Gossypium hirsutum HOM05D000189 ORTHO05D008437 5.0e-10 68.2 63 50.8
Phvul.002G078000 Phaseolus vulgaris HOM05D000189 ORTHO05D008437 5.0e-10 68.2 56 53.6
CAN.G27.10 Capsicum annuum HOM05D000189 ORTHO05D008437 6.5e-10 67.8 75 52.0
GSVIVG01020081001 Vitis vinifera HOM05D000189 ORTHO05D008437 6.5e-10 67.8 63 54.0
BolC5t31090H Brassica oleracea HOM05D000189 ORTHO05D008437 8.5e-10 67.4 69 53.6
BraA09t39544Z Brassica rapa HOM05D000189 ORTHO05D008437 8.5e-10 67.4 56 58.9
Ca_07372_v3 Cicer arietinum L. HOM05D000189 ORTHO05D008437 8.5e-10 67.4 56 53.6
ClCG05G024660 Citrullus lanatus HOM05D000189 ORTHO05D008437 8.5e-10 67.4 58 56.9
Haze_10219 Corylus avellana HOM05D000189 ORTHO05D008437 8.5e-10 67.4 51 60.8
FvH4_4g32090 Fragaria vesca HOM05D000189 ORTHO05D008437 8.5e-10 67.4 51 62.7
FAN12G3282 Fragaria x ananassa HOM05D000189 ORTHO05D008437 8.5e-10 67.4 51 62.7
Sed0024513 Sechium edule HOM05D000189 ORTHO05D008437 8.5e-10 67.4 62 54.8
HanXRQChr17g0544611 Helianthus annuus HOM05D000189 ORTHO05D008437 1.1e-09 67.0 57 54.4
Glyma.01G041600 Glycine max HOM05D000189 ORTHO05D008437 1.4e-09 66.6 56 51.8
Oeu044565.1 Olea europaea HOM05D000189 ORTHO05D008437 1.4e-09 66.6 56 55.4
Solyc05g006940.3 Solanum lycopersicum HOM05D000189 ORTHO05D008437 1.9e-09 66.2 61 49.2
QL03p065954 Quercus lobata HOM05D000189 ORTHO05D008437 2.5e-09 65.9 74 47.3
unitig_747.g21164 Utricularia gibba HOM05D000189 ORTHO05D008437 2.5e-09 65.9 63 47.6
ECA246G1579 Erigeron canadensis HOM05D000189 ORTHO05D008437 3.2e-09 65.5 60 46.7
Migut.L01349 Erythranthe guttata HOM05D000189 ORTHO05D008437 3.2e-09 65.5 65 50.8
TPR.G29468 Trifolium pratense HOM05D000189 ORTHO05D008437 3.2e-09 65.5 48 64.6
MBI11_g10517_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D008437 4.2e-09 65.1 70 51.4
Rhsim12G0129500 Rhododendron simsii HOM05D000189 ORTHO05D008437 4.2e-09 65.1 68 45.6
Nn4g23025 Nelumbo nucifera HOM05D000189 ORTHO05D008437 5.5e-09 64.7 56 55.4
Aqoxy3G03254 Aquilegia oxysepala HOM05D000189 ORTHO05D008437 7.2e-09 64.3 50 56.0
Dinv34194 Davidia involucrata HOM05D000189 ORTHO05D008437 7.2e-09 64.3 56 58.9
Peaxi162Scf00209g00611 Petunia axillaris HOM05D000189 ORTHO05D008437 9.4e-09 63.9 55 52.7
Sopen05g002900 Solanum pennellii HOM05D000189 ORTHO05D008437 9.4e-09 63.9 56 53.6
PGSC0003DMG400017638 Solanum tuberosum HOM05D000189 ORTHO05D008437 1.2e-08 63.5 57 52.6
Gohir.D05G325500 Gossypium hirsutum HOM05D000189 ORTHO05D008437 1.6e-08 63.2 58 50.0
Gorai.009G349700 Gossypium raimondii HOM05D000189 ORTHO05D008437 1.6e-08 63.2 58 50.0
Eucgr.B03406 Eucalyptus grandis HOM05D000189 ORTHO05D008437 2.7e-08 62.4 48 58.3
SGA_v2.0_scaffold163G38063 Striga asiatica HOM05D000189 ORTHO05D008437 2.7e-08 62.4 64 46.9
Atru.chr11.1863 Acer truncatum HOM05D000189 ORTHO05D008437 3.6e-08 62.0 71 47.9
EL10Ac6g13140 Beta vulgaris HOM05D000189 ORTHO05D008437 3.6e-08 62.0 89 37.1
Glyma.02G022400 Glycine max HOM05D000189 ORTHO05D008437 3.6e-08 62.0 56 50.0
THA.LOC104808767 Tarenaya hassleriana HOM05D000189 ORTHO05D008437 3.6e-08 62.0 49 63.3
PSO591G0400 Papaver somniferum HOM05D000189 ORTHO05D008437 4.7e-08 61.6 67 46.3
Lsat_1_v5_gn_3_49880 Lactuca sativa HOM05D000189 ORTHO05D008437 7.9e-08 60.8 57 49.1
PSO832G2566 Papaver somniferum HOM05D000189 ORTHO05D008437 7.9e-08 60.8 52 51.9
VMungo1215G1954 Vigna mungo HOM05D000189 ORTHO05D008437 1.4e-07 60.1 70 42.9
Nitab4.5_0000679g0090 Nicotiana tabacum HOM05D000189 ORTHO05D008437 2.3e-07 59.3 103 37.9
Hund25275 Selenicereus undatus HOM05D000189 ORTHO05D008437 2.3e-07 59.3 61 49.2
COL.COLO4_34958 Corchorus olitorius HOM05D000836 ORTHO05D000709 3.0e-07 58.9 42 57.1
Zm00001eb151590 Zea mays HOM05D000189 ORTHO05D008437 3.0e-07 58.9 58 53.4
Cc11_g13570 Coffea canephora HOM05D000189 ORTHO05D008437 5.1e-07 58.2 50 56.0
Sc04g0008470 Simmondsia chinensis HOM05D000189 ORTHO05D008437 5.1e-07 58.2 64 48.4
CSS0040452 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D008437 6.7e-07 57.8 57 52.6
AUR62026265 Chenopodium quinoa HOM05D000189 ORTHO05D008437 1.5e-06 56.6 94 39.4
FAN07G0826 Fragaria x ananassa HOM05D000189 ORTHO05D008437 1.5e-06 56.6 47 61.7
arahy.Tifrunner.gnm1.ann1.1SGT9N Arachis hypogaea HOM05D000189 ORTHO05D008437 4.4e-06 55.1 58 51.7
arahy.Tifrunner.gnm1.ann1.DU2U9I Arachis hypogaea HOM05D000189 ORTHO05D008437 5.7e-06 54.7 58 50.0
AUR62026456 Chenopodium quinoa HOM05D000189 ORTHO05D008437 5.7e-06 54.7 77 41.6
SMO358G0474 Selaginella moellendorffii HOM05D000189 ORTHO05D008437 7.4e-06 54.3 47 55.3
vmacro16322 Vaccinium macrocarpon HOM05D000189 ORTHO05D008437 9.7e-06 53.9 68 38.2


User provided reference genes

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