Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.2e-241 838.6 423 100.0
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.4e-176 622.5 422 75.8
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.4e-176 622.5 384 79.4
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 9.2e-176 620.5 419 75.9
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 6.0e-175 617.8 419 75.7
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 3.9e-174 615.1 417 76.3
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 5.1e-174 614.8 380 80.3
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.1e-171 605.5 399 76.9
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 9.0e-171 604.0 395 77.2
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.6e-170 602.4 381 79.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.6e-170 602.4 412 75.2
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.4e-170 602.1 391 77.7
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 4.4e-170 601.7 412 75.2
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 4.4e-170 601.7 388 78.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 4.4e-170 601.7 374 79.7
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.7e-169 599.7 413 74.1
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.7e-169 599.7 368 81.5
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 2.2e-169 599.4 423 72.8
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 4.9e-169 598.2 400 76.0
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 4.9e-169 598.2 423 72.6
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 8.4e-169 597.4 400 76.2
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 8.4e-169 597.4 377 79.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 8.4e-169 597.4 395 76.2
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-168 596.3 400 75.8
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.9e-168 596.3 382 78.8
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.4e-168 595.9 368 81.0
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.2e-168 595.5 389 77.9
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 5.4e-168 594.7 422 72.5
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.1e-168 594.3 437 71.6
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 7.1e-168 594.3 422 72.0
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 7.1e-168 594.3 403 74.9
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 7.1e-168 594.3 395 76.2
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 9.3e-168 594.0 402 74.9
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 1.6e-167 593.2 406 74.9
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.7e-167 592.4 382 78.0
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.7e-167 592.4 405 74.8
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 3.5e-167 592.0 422 72.0
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 3.5e-167 592.0 422 72.0
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 6.0e-167 591.3 366 80.9
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 6.0e-167 591.3 416 72.8
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 7.8e-167 590.9 380 78.2
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 7.8e-167 590.9 382 77.7
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.0e-166 590.5 364 81.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.0e-166 590.5 390 76.7
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.3e-166 590.1 422 71.6
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-166 590.1 405 74.6
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.3e-166 589.3 434 71.0
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 2.3e-166 589.3 412 74.0
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 3.9e-166 588.6 408 73.8
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.1e-166 588.2 390 76.7
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.5e-165 586.6 420 72.6
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 2.5e-165 585.9 402 74.9
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 2.5e-165 585.9 366 80.6
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.3e-165 585.1 364 79.7
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 5.6e-165 584.7 392 75.0
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 6.2e-164 581.3 413 71.9
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 6.2e-164 581.3 365 80.3
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 6.2e-164 581.3 392 75.5
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.4e-163 580.1 400 75.0
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 5.3e-163 578.2 399 74.7
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 9.0e-163 577.4 391 76.5
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.5e-162 576.6 377 77.5
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.0e-162 576.2 405 72.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.6e-162 575.9 420 71.7
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 2.9e-161 572.4 339 82.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 4.9e-161 571.6 393 74.6
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 4.9e-161 571.6 425 70.6
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 1.9e-160 569.7 397 73.8
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.4e-160 569.3 396 73.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 3.2e-160 568.9 361 77.6
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.2e-159 567.0 422 70.1
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.6e-159 566.6 422 71.3
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 4.6e-159 565.1 324 85.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 6.0e-159 564.7 379 75.5
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 1.8e-158 563.1 361 78.9
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.3e-158 562.8 365 78.6
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.3e-158 562.8 365 78.6
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 3.0e-158 562.4 397 73.8
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 6.7e-158 561.2 422 68.7
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 8.7e-158 560.8 423 70.4
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 8.7e-158 560.8 423 71.2
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 8.7e-158 560.8 393 73.3
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.5e-157 560.1 403 73.2
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 3.3e-157 558.9 361 78.1
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.3e-157 558.9 390 73.3
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 4.3e-157 558.5 377 75.3
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 5.6e-157 558.1 412 71.4
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.6e-157 558.1 381 75.3
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 7.4e-157 557.8 324 84.9
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.4e-157 557.8 365 75.1
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.3e-156 557.0 388 71.6
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.6e-156 556.6 403 70.7
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.6e-156 556.6 397 72.8
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.8e-156 555.8 322 84.8
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.4e-155 553.5 430 68.1
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.4e-155 552.7 405 71.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 3.1e-155 552.4 402 70.6
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.2e-154 550.4 365 77.3
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 9.9e-154 547.4 367 74.1
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 3.2e-152 542.3 397 70.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 3.2e-152 542.3 397 69.3
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 4.2e-152 542.0 377 74.3
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 9.3e-152 540.8 364 75.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 9.3e-152 540.8 382 73.6
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 9.3e-152 540.8 364 75.8
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-151 539.7 382 73.0
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 4.6e-151 538.5 310 83.9
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.3e-148 530.4 394 68.3
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.3e-148 530.4 374 73.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 6.9e-147 524.6 419 65.4
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.6e-146 522.7 330 79.1
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.0e-142 510.8 374 71.9
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 3.9e-142 508.8 374 71.7
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.7e-141 504.2 315 79.4
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.8e-139 500.0 375 69.9
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.7e-135 486.1 279 84.2
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 5.5e-128 461.8 347 67.7
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 6.7e-126 454.9 366 68.0
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 6.7e-126 454.9 344 67.2
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.8e-124 449.5 360 64.4
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 8.2e-124 448.0 349 65.0
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 4.1e-123 445.7 339 66.4
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.2e-122 444.1 330 67.3
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 4.5e-122 442.2 317 71.6
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.3e-121 440.7 348 65.5
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.9e-121 439.5 339 65.8
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.9e-121 439.5 339 65.8
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.9e-121 439.5 339 65.8
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.1e-120 437.6 337 66.2
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.9e-120 436.8 264 81.8
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 5.5e-120 435.3 337 65.9
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.0e-117 426.8 350 60.3
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.2e-114 417.5 344 60.2
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.8e-110 403.7 307 64.5
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 3.0e-110 402.9 273 73.6
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.2e-109 401.0 396 56.8
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.8e-105 386.0 277 69.7
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.2e-98 364.4 222 81.5
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.6e-98 364.0 325 63.1
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 2.3e-97 360.1 283 66.8
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 4.4e-77 292.7 216 69.4
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 8.3e-68 261.9 234 59.8
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.7e-66 256.9 253 56.1
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.9e-65 253.1 192 68.2
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 2.0e-61 240.7 276 47.8
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.2e-55 221.5 244 51.6
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-50 204.9 153 66.7
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 9.6e-48 195.3 173 59.5
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.8e-46 191.0 303 37.6
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-45 187.2 173 57.8
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.6e-42 177.9 148 64.9
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 4.6e-42 176.4 103 77.7
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.6e-42 176.4 100 85.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 5.1e-41 172.9 104 80.8
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 2.8e-39 167.2 101 75.2
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-38 164.9 163 55.2
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 7.6e-37 159.1 169 50.3
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 2.2e-36 157.5 116 66.4
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 3.5e-34 150.2 122 66.4
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 3.9e-33 146.7 212 38.7
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.5e-32 144.1 77 80.5
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 3.3e-32 143.7 169 48.5
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 2.1e-31 141.0 162 49.4
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.1e-30 138.7 136 58.8
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.7e-28 131.3 74 75.7
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.9e-25 120.2 72 80.6
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.5e-21 106.7 74 71.6
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.4e-19 101.7 106 52.8
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 2.0e-16 91.3 173 38.2
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.4e-09 68.6 71 52.1
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 5.1e-09 66.6 49 65.3
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-08 65.5 36 86.1
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 4.4e-08 63.5 45 71.1
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 3.7e-07 60.5 79 45.6
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 3.7e-07 60.5 79 45.6


User provided reference genes

Program Settings