Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 9.8e-211 736.5 359 100.0
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 5.9e-147 524.6 358 72.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.2e-144 516.9 321 76.0
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.8e-143 513.1 311 77.5
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 6.7e-143 511.1 312 77.6
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 8.8e-143 510.8 299 80.3
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.1e-142 510.4 315 76.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.0e-142 509.6 358 69.6
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.5e-142 509.2 312 77.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.5e-142 509.2 318 75.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 5.7e-142 508.1 362 70.2
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.4e-142 507.7 321 74.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.2e-141 506.1 368 67.9
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.2e-141 506.1 361 70.4
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 4.8e-141 505.0 321 74.8
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 6.3e-141 504.6 354 71.8
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.4e-140 503.4 322 74.5
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.8e-140 503.1 295 79.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.1e-140 502.3 365 69.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 4.1e-140 501.9 331 72.2
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 5.3e-140 501.5 361 69.5
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 6.9e-140 501.1 369 68.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.4e-139 498.8 365 67.9
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.9e-139 498.0 295 78.3
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 7.7e-139 497.7 362 69.9
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.0e-138 497.3 360 68.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.3e-138 496.9 355 68.5
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.7e-138 496.5 363 69.1
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.7e-138 496.5 345 71.0
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.2e-138 496.1 312 75.3
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.9e-138 495.7 363 69.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.9e-138 495.7 352 69.0
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 5.0e-138 495.0 295 77.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 5.0e-138 495.0 360 68.3
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-137 493.8 359 68.2
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.4e-137 493.4 359 68.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.4e-137 493.4 315 73.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.9e-137 493.0 311 75.6
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.9e-137 493.0 360 68.3
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.9e-137 493.0 367 67.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.9e-137 493.0 360 68.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 3.2e-137 492.3 353 68.6
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 4.2e-137 491.9 366 67.5
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.5e-137 491.5 365 66.8
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.5e-137 491.5 364 66.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 7.2e-137 491.1 374 66.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.2e-136 490.3 327 72.2
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.6e-136 490.0 314 73.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.6e-136 490.0 318 71.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.6e-136 490.0 349 68.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-136 490.0 349 68.8
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.1e-136 489.6 360 65.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.1e-136 489.6 300 76.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.7e-136 489.2 350 69.1
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.7e-136 489.2 311 75.6
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.7e-136 489.2 312 73.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.1e-136 488.0 326 71.2
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 6.1e-136 488.0 357 68.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 6.1e-136 488.0 372 65.9
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.1e-136 488.0 371 65.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 7.9e-136 487.6 353 69.1
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 7.9e-136 487.6 300 75.7
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 7.9e-136 487.6 355 66.8
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.0e-135 487.3 316 73.4
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-135 486.5 354 69.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.8e-135 486.5 312 72.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.0e-135 485.7 355 66.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.9e-135 485.3 346 68.8
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 5.1e-135 485.0 291 77.0
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 5.1e-135 485.0 350 68.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 5.1e-135 485.0 364 65.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 6.7e-135 484.6 359 65.2
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 8.8e-135 484.2 295 75.9
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 8.8e-135 484.2 350 68.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-134 483.4 352 68.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-134 482.6 314 72.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.6e-134 482.6 314 72.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 3.3e-134 482.3 354 69.2
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.3e-134 482.3 358 67.3
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 3.3e-134 482.3 355 66.5
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.3e-134 482.3 361 65.7
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.4e-134 481.1 322 72.4
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 7.4e-134 481.1 321 71.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 9.7e-134 480.7 354 65.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.3e-133 480.3 352 67.6
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 2.2e-133 479.6 345 69.3
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.2e-133 479.6 292 76.0
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.2e-133 479.6 313 72.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.2e-133 479.6 355 65.4
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-133 479.2 294 76.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.7e-133 478.8 372 65.1
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 4.8e-133 478.4 351 67.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-133 478.0 358 67.3
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-132 476.5 343 69.1
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.1e-132 475.7 355 63.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.0e-132 474.6 344 66.3
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.6e-131 472.6 362 64.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-130 470.7 347 69.2
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.0e-130 470.7 295 73.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.8e-130 468.8 357 65.3
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 3.8e-130 468.8 302 73.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.5e-129 466.1 309 74.8
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 4.2e-129 465.3 312 72.8
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.0e-126 456.4 348 65.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.0e-122 444.1 424 54.7
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-122 443.0 383 61.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.9e-122 442.6 282 75.5
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 8.8e-119 431.0 388 60.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.3e-117 424.9 259 76.4
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.7e-114 416.8 277 71.5
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.0e-114 415.2 282 68.8
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 4.2e-113 412.1 286 67.8
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 5.5e-113 411.8 329 65.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 8.3e-109 397.9 288 67.0
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.1e-108 397.5 310 63.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-107 392.9 347 61.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 6.1e-104 381.7 285 64.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-102 377.1 318 63.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.5e-99 365.5 244 69.7
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 3.9e-98 362.5 287 59.9
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 5.8e-94 348.6 290 58.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.2e-92 342.8 240 65.8
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 1.2e-91 340.9 280 60.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.3e-90 337.4 294 57.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.3e-85 320.9 252 63.5
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.3e-82 310.1 306 56.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 3.9e-82 309.3 246 63.4
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 9.9e-78 294.7 288 53.5
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 5.6e-73 278.9 168 78.6
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.6e-64 250.8 144 78.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.3e-58 230.3 229 51.5
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-55 221.1 127 78.7
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.2e-52 209.5 124 73.4
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.8e-46 189.1 331 39.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.5e-41 173.7 146 61.6
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.2e-40 168.7 100 73.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 7.6e-38 162.2 146 59.6
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.9e-37 160.2 95 75.8
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-35 153.7 146 58.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.0e-34 150.2 108 65.7
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-30 136.7 146 51.4
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.4e-28 131.3 72 86.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.1e-19 100.9 64 76.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.5e-17 94.7 56 73.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.6e-17 94.0 57 70.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 5.0e-13 79.7 44 79.5
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-12 78.6 44 77.3
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-12 78.6 67 59.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.1e-12 78.6 67 59.7
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.9e-12 77.8 43 79.1
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.3e-09 67.0 35 80.0
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.3e-08 65.1 39 66.7
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.8e-08 63.2 37 83.8
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 2.6e-06 57.4 116 31.0


User provided reference genes

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