Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.9e-185 651.7 331 100.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 4.8e-103 378.6 329 58.4
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 5.3e-102 375.2 301 61.8
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 2.2e-100 369.8 308 58.8
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 1.9e-99 366.7 306 60.1
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 2.5e-99 366.3 290 60.3
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.6e-98 363.6 281 61.9
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 3.5e-98 362.5 311 58.2
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 1.3e-97 360.5 304 59.2
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.8e-97 360.1 309 57.9
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.3e-97 359.8 287 60.3
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.3e-97 359.8 304 59.2
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.3e-97 359.8 293 59.4
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 2.3e-97 359.8 314 57.3
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 3.9e-97 359.0 305 58.7
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.7e-97 358.2 287 59.9
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 6.7e-97 358.2 304 58.2
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 5.7e-96 355.1 321 53.0
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 9.7e-96 354.4 308 57.8
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.3e-95 354.0 302 58.9
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 4.8e-95 352.1 308 57.1
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 4.8e-95 352.1 323 55.4
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 3.1e-94 349.4 321 52.0
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 6.9e-94 348.2 298 58.4
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.2e-93 347.4 322 55.0
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.5e-93 347.1 306 57.2
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.6e-93 346.3 311 56.9
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 3.4e-93 345.9 308 56.2
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 4.5e-93 345.5 303 57.8
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 7.7e-93 344.7 310 56.1
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 5.0e-92 342.0 300 57.7
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 8.5e-92 341.3 299 57.2
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 7.9e-90 334.7 305 55.4
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.8e-89 333.6 302 54.6
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 3.0e-89 332.8 310 53.5
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 3.0e-89 332.8 300 56.7
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 5.1e-89 332.0 305 56.4
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.5e-88 330.5 289 57.4
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 2.5e-88 329.7 313 54.3
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.5e-88 329.7 307 54.7
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 2.5e-88 329.7 295 54.9
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 3.7e-87 325.9 291 54.3
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 4.8e-87 325.5 288 54.9
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 8.2e-87 324.7 290 54.8
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 2.4e-86 323.2 300 50.7
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 2.4e-86 323.2 267 58.4
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 3.1e-86 322.8 324 48.5
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 4.1e-86 322.4 294 54.1
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 5.3e-86 322.0 293 52.2
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 6.9e-86 321.6 325 49.2
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 6.9e-86 321.6 295 53.9
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 4.5e-85 318.9 298 53.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 5.9e-85 318.5 301 54.8
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.3e-84 317.4 309 49.5
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 2.9e-84 316.2 306 52.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 5.0e-84 315.5 326 47.9
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 5.0e-84 315.5 265 59.6
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.4e-83 313.9 309 48.9
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.5e-83 313.2 289 54.7
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 3.2e-83 312.8 299 49.8
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 4.2e-83 312.4 309 48.9
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 9.4e-83 311.2 309 48.9
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.7e-82 309.7 281 56.2
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 7.9e-82 308.1 326 48.2
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 3.3e-80 302.8 297 49.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.7e-79 300.4 307 48.5
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 4.8e-79 298.9 307 47.9
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.8e-78 297.0 362 45.6
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 9.1e-78 294.7 240 58.8
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.9e-76 289.7 326 46.9
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 8.5e-76 288.1 296 51.7
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 8.5e-76 288.1 287 51.9
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-73 280.4 296 50.7
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.1e-72 277.7 248 57.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 4.4e-72 275.8 332 46.7
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.1e-70 271.2 330 41.8
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 1.4e-70 270.8 277 52.0
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 5.5e-67 258.8 308 47.7
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 4.4e-64 249.2 203 61.1
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.4e-62 243.4 128 96.1
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 7.0e-62 241.9 205 59.5
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 2.2e-60 236.9 220 55.5
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 2.9e-60 236.5 212 57.1
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 5.0e-60 235.7 240 52.9
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.1e-59 234.6 212 57.5
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.6e-58 230.7 205 57.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 2.1e-58 230.3 334 44.3
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 3.6e-58 229.6 271 48.7
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 6.3e-55 218.8 329 40.7
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.6e-52 208.8 265 46.4
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.7e-47 194.1 164 56.7
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.6e-45 187.6 286 40.9
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.2e-42 177.9 289 37.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 1.3e-39 167.9 164 52.4
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 2.2e-39 167.2 214 43.0
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 4.6e-37 159.5 121 64.5
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 8.9e-33 145.2 291 31.3
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 2.3e-28 130.6 96 64.6
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 1.9e-27 127.5 151 44.4
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 7.3e-27 125.6 94 59.6
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 3.6e-26 123.2 110 57.3
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.8e-25 120.9 91 63.7
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.9e-25 118.6 97 58.8
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 2.9e-23 113.6 80 58.8
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 6.0e-21 105.9 79 63.3
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.0e-20 105.1 162 32.1
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 2.5e-19 100.5 283 29.0
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.1e-17 95.1 177 37.9
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.2e-17 92.8 85 50.6
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.5e-16 91.3 85 49.4
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.7e-13 80.5 63 54.0
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 3.6e-10 70.1 65 47.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.8e-07 60.1 42 61.9
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 4.2e-06 56.6 45 62.2


User provided reference genes

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