Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 3.7e-120 434.9 215 100.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.5e-86 321.6 223 71.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.8e-82 309.7 225 68.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 8.8e-82 307.4 225 67.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.6e-81 305.8 205 71.7
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.3e-81 305.4 228 67.1
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 5.7e-81 304.7 204 73.0
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.7e-81 304.7 206 71.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 7.5e-81 304.3 227 68.3
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-80 302.8 233 65.2
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-80 302.8 233 65.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.8e-80 302.4 212 70.3
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.8e-80 302.4 204 72.5
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 8.2e-80 300.8 233 64.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-80 300.8 233 64.8
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-80 300.8 233 64.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.1e-79 300.4 197 71.6
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.4e-79 299.3 211 70.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.1e-79 298.9 201 71.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.1e-79 298.9 198 74.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.1e-79 298.9 200 72.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 5.3e-79 298.1 212 69.3
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.3e-79 298.1 233 64.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.3e-79 298.1 233 64.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 7.0e-79 297.7 197 73.1
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 9.1e-79 297.4 230 64.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.2e-78 297.0 211 69.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.2e-78 297.0 227 67.4
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.2e-78 297.0 197 73.1
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-78 296.6 231 66.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.5e-78 295.4 205 70.7
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.5e-78 295.4 230 66.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 4.5e-78 295.0 228 65.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.5e-78 295.0 233 64.4
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.7e-78 294.3 198 72.2
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 7.7e-78 294.3 199 70.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.3e-77 293.5 200 71.0
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.7e-77 293.1 197 71.6
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.2e-77 292.7 225 64.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.2e-77 292.7 228 66.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.9e-77 292.4 220 67.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.9e-77 292.4 205 69.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-77 292.4 198 73.2
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.0e-77 291.6 202 69.8
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 5.0e-77 291.6 221 67.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.5e-77 291.2 197 70.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.1e-76 290.4 203 69.5
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-76 290.4 198 72.7
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-76 290.4 198 72.7
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.1e-76 290.4 200 70.5
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.5e-76 290.0 211 67.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-76 289.7 197 71.1
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-76 289.7 206 68.9
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.2e-76 288.9 228 64.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.2e-76 288.9 202 69.8
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 5.5e-76 288.1 197 68.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 7.2e-76 287.7 205 69.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 7.2e-76 287.7 205 69.3
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 9.4e-76 287.3 205 67.3
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.6e-75 286.6 229 63.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.6e-75 286.6 229 64.6
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.6e-75 286.6 229 64.2
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 6.1e-75 284.6 188 71.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.4e-74 283.5 197 68.5
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.2e-74 281.6 206 68.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.2e-74 281.6 206 68.9
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.5e-73 280.0 206 67.0
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.0e-73 279.6 205 67.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 9.8e-73 277.3 226 61.1
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-72 276.9 200 69.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.2e-72 276.2 191 69.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.8e-72 275.8 208 66.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.7e-72 275.4 207 66.7
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 6.3e-72 274.6 197 68.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 8.3e-72 274.2 202 66.8
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.1e-71 273.9 189 69.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.4e-71 273.5 189 69.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.8e-71 273.1 200 68.0
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.1e-71 271.9 208 64.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 7.0e-71 271.2 207 65.2
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.1e-71 270.8 208 65.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-70 270.4 188 72.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.2e-70 270.4 209 65.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.0e-70 269.6 198 68.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.5e-70 268.5 188 71.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.0e-69 267.3 214 60.3
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.7e-69 266.5 207 64.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 6.5e-69 264.6 211 63.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 8.5e-69 264.2 221 61.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.9e-68 263.1 198 67.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.9e-68 263.1 203 64.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.2e-68 262.3 209 62.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 9.4e-68 260.8 215 60.5
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 9.4e-68 260.8 224 60.7
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.1e-67 259.6 186 68.3
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.1e-67 259.6 224 60.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.7e-67 259.2 218 59.2
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.7e-67 258.5 204 63.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.4e-65 252.3 188 66.0
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 4.4e-65 251.9 207 58.9
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.3e-64 250.4 204 62.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.2e-64 249.6 203 62.6
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.9e-64 248.4 203 62.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 8.3e-64 247.7 227 58.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.4e-63 246.9 214 59.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 3.1e-63 245.7 226 58.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 5.4e-63 245.0 230 57.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.0e-63 244.6 227 57.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.0e-63 244.6 227 57.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.0e-63 244.6 227 57.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.2e-63 244.2 219 57.1
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.5e-62 242.3 226 58.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-61 240.0 226 57.1
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.8e-61 238.8 226 56.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 5.0e-61 238.4 226 56.2
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.0e-61 238.4 226 56.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.0e-61 238.4 226 56.2
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 8.6e-61 237.7 226 55.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-60 236.1 228 55.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.3e-60 235.7 190 61.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 5.6e-60 235.0 204 58.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.0e-58 229.2 192 60.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.3e-56 223.8 142 73.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.8e-55 219.9 223 56.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.4e-55 219.5 202 59.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.6e-54 215.3 187 56.7
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.3e-52 209.1 219 52.1
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.0e-50 204.1 163 63.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.9e-50 201.1 207 54.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.6e-49 199.5 187 56.7
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.2e-47 192.6 165 58.8
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.8e-43 179.5 120 72.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 6.8e-42 174.9 126 70.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 8.9e-42 174.5 120 64.2
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.7e-40 170.2 188 48.9
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 9.2e-39 164.5 101 74.3
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 5.1e-37 158.7 108 63.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.3e-36 155.6 104 71.2
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.8e-19 99.0 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.2e-14 84.3 60 61.7
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.4e-07 60.1 151 31.1
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 7.1e-07 58.5 96 37.5
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.7e-06 56.6 103 30.1
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.7e-06 56.6 103 30.1


User provided reference genes

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