Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019439 Vanilla planifolia HOM05D000610 ORTHO05D004774 2.6e-59 231.9 119 100.0
HPP92_019406 Vanilla planifolia HOM05D000610 ORTHO05D004774 1.3e-29 133.3 68 100.0
HPP92_019408 Vanilla planifolia HOM05D000610 ORTHO05D004774 6.2e-29 131.0 68 98.5
COL.COLO4_08235 Corchorus olitorius HOM05D000610 ORTHO05D004774 4.1e-20 101.7 65 73.8
ATR0188G019 Amborella trichopoda HOM05D000610 ORTHO05D004774 1.2e-19 100.1 65 72.3
CDE05G2711 Ceratophyllum demersum HOM05D000610 ORTHO05D004774 2.6e-19 99.0 76 63.2
Hma1.2p1_0871F.1_g231060 Hydrangea macrophylla HOM05D000610 ORTHO05D004774 2.6e-19 99.0 65 72.3
Cfa016807 Carpinus fangiana HOM05D000610 ORTHO05D004774 7.7e-19 97.4 65 70.8
Haze_19840 Corylus avellana HOM05D000610 ORTHO05D004774 7.7e-19 97.4 65 70.8
Gohir.A01G131111 Gossypium hirsutum HOM05D000610 ORTHO05D004774 7.7e-19 97.4 65 70.8
Dinv18665 Davidia involucrata HOM05D000610 ORTHO05D004774 1.0e-18 97.1 65 69.2
Gohir.D01G120000 Gossypium hirsutum HOM05D000610 ORTHO05D004774 1.0e-18 97.1 65 70.8
Gorai.002G146400 Gossypium raimondii HOM05D000610 ORTHO05D004774 1.0e-18 97.1 65 70.8
PGR004G2234 Punica granatum HOM05D000610 ORTHO05D004774 1.3e-18 96.7 65 72.3
CiPaw.09G038900 Carya illinoinensis HOM05D000610 ORTHO05D004774 2.2e-18 95.9 65 69.2
MBI19_g13038_MAGBIO Magnolia biondii HOM05D000610 ORTHO05D004774 2.9e-18 95.5 65 69.2
Nn7g36312 Nelumbo nucifera HOM05D000610 ORTHO05D004774 2.9e-18 95.5 65 67.7
PSO384G3904 Papaver somniferum HOM05D000610 ORTHO05D004774 1.1e-17 93.6 61 72.1
Prupe.7G058100 Prunus persica HOM05D000610 ORTHO05D004774 1.1e-17 93.6 65 67.7
TWI74G1635 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 1.1e-17 93.6 65 69.2
Duzib093G2237 Durio zibethinus HOM05D000610 ORTHO05D004774 1.4e-17 93.2 65 67.7
Manes.09G020400 Manihot esculenta HOM05D000610 ORTHO05D004774 1.4e-17 93.2 65 67.7
TWI53G1231 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 1.4e-17 93.2 65 69.2
TAR636G2602 Trochodendron aralioides HOM05D000610 ORTHO05D004774 1.4e-17 93.2 65 67.7
Aqoxy1G00231 Aquilegia oxysepala HOM05D000610 ORTHO05D004774 1.9e-17 92.8 76 59.2
Migut.J01749 Erythranthe guttata HOM05D000610 ORTHO05D004774 1.9e-17 92.8 71 64.8
RcHm_v2.0_Chr3g0482761 Rosa chinensis HOM05D000610 ORTHO05D004774 1.9e-17 92.8 65 67.7
FAN09G1277 Fragaria x ananassa HOM05D000610 ORTHO05D004774 7.2e-17 90.9 65 66.2
FAN14G3175 Fragaria x ananassa HOM05D000610 ORTHO05D004774 7.2e-17 90.9 65 66.2
Thecc.05G148900 Theobroma cacao HOM05D000610 ORTHO05D004774 7.2e-17 90.9 65 66.2
DCAR_020494 Daucus carota HOM05D000610 ORTHO05D004774 9.4e-17 90.5 65 61.5
FAN02G4008 Fragaria x ananassa HOM05D000610 ORTHO05D004774 9.4e-17 90.5 65 66.2
HanXRQChr10g0300621 Helianthus annuus HOM05D000610 ORTHO05D004774 9.4e-17 90.5 77 59.7
MD12G1079400 Malus domestica HOM05D000610 ORTHO05D004774 9.4e-17 90.5 65 66.2
MSTRG.6422 Avicennia marina HOM05D000610 ORTHO05D004774 1.6e-16 89.7 65 67.7
SGA_v2.0_scaffold69G23121 Striga asiatica HOM05D000610 ORTHO05D004774 1.6e-16 89.7 70 64.3
GSVIVG01033258001 Vitis vinifera HOM05D000610 ORTHO05D004774 1.6e-16 89.7 65 67.7
Ciclev10004128m.g Citrus clementina HOM05D000610 ORTHO05D004774 2.1e-16 89.4 65 64.6
Lsat_1_v5_gn_9_30620 Lactuca sativa HOM05D000610 ORTHO05D004774 2.1e-16 89.4 77 58.4
Duzib128G1628 Durio zibethinus HOM05D000610 ORTHO05D004774 2.7e-16 89.0 65 64.6
Psat3g072960 Pisum sativum HOM05D000610 ORTHO05D004774 2.7e-16 89.0 70 60.0
CANSAT80G2124 Cannabis sativa HOM05D000610 ORTHO05D004774 3.6e-16 88.6 65 64.6
Cc06_g17650 Coffea canephora HOM05D000610 ORTHO05D004774 4.6e-16 88.2 79 55.7
ECA247G3032 Erigeron canadensis HOM05D000610 ORTHO05D004774 4.6e-16 88.2 77 51.9
Glyma.03G136000 Glycine max HOM05D000610 ORTHO05D004774 4.6e-16 88.2 65 64.6
Lj1g0005409 Lotus japonicus HOM05D000610 ORTHO05D004774 4.6e-16 88.2 60 68.3
Nitab4.5_0000586g0130 Nicotiana tabacum HOM05D000610 ORTHO05D004774 4.6e-16 88.2 68 64.7
Nitab4.5_0009615g0020 Nicotiana tabacum HOM05D000610 ORTHO05D004774 4.6e-16 88.2 68 64.7
Eucgr.A02339 Eucalyptus grandis HOM05D000610 ORTHO05D004774 6.1e-16 87.8 65 66.2
TPR.G3701 Trifolium pratense HOM05D000610 ORTHO05D004774 6.1e-16 87.8 65 64.6
Atru.chr1.1122 Acer truncatum HOM05D000610 ORTHO05D004774 7.9e-16 87.4 65 63.1
vmacro07838 Vaccinium macrocarpon HOM05D000610 ORTHO05D004774 7.9e-16 87.4 65 63.1
CSS0013319 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D004774 1.4e-15 86.7 65 61.5
Potri.006G049300 Populus trichocarpa HOM05D000610 ORTHO05D004774 1.4e-15 86.7 65 66.2
arahy.Tifrunner.gnm1.ann1.624G49 Arachis hypogaea HOM05D000610 ORTHO05D004774 1.8e-15 86.3 69 58.0
SalBow6G0358 Salvia bowleyana HOM05D000610 ORTHO05D004774 1.8e-15 86.3 65 66.2
SalBow6G6580 Salvia bowleyana HOM05D000610 ORTHO05D004774 1.8e-15 86.3 65 66.2
Solyc04g015970.3 Solanum lycopersicum HOM05D000610 ORTHO05D004774 1.8e-15 86.3 72 59.7
Sopen04g007980 Solanum pennellii HOM05D000610 ORTHO05D004774 1.8e-15 86.3 72 59.7
EL10Ac3g07101 Beta vulgaris HOM05D000610 ORTHO05D004774 3.0e-15 85.5 65 64.6
Peaxi162Scf00130g00325 Petunia axillaris HOM05D000610 ORTHO05D004774 3.0e-15 85.5 71 59.2
Ah.04g151590 Amaranthus hybridus HOM05D000610 ORTHO05D004774 3.9e-15 85.1 65 61.5
AL4G40000 Arabidopsis lyrata HOM05D000610 ORTHO05D004774 3.9e-15 85.1 65 64.6
arahy.Tifrunner.gnm1.ann1.50CUSQ Arachis hypogaea HOM05D000610 ORTHO05D004774 3.9e-15 85.1 65 60.0
arahy.Tifrunner.gnm1.ann1.LF6SQW Arachis hypogaea HOM05D000610 ORTHO05D004774 3.9e-15 85.1 65 60.0
THA.LOC104824436 Tarenaya hassleriana HOM05D000610 ORTHO05D004774 3.9e-15 85.1 65 63.1
Carub.0004s2397 Capsella rubella HOM05D000610 ORTHO05D004774 5.1e-15 84.7 65 63.1
AUR62026051 Chenopodium quinoa HOM05D000610 ORTHO05D004774 5.1e-15 84.7 65 60.0
Medtr7g091380 Medicago truncatula HOM05D000610 ORTHO05D004774 5.1e-15 84.7 65 63.1
AT2G41700 Arabidopsis thaliana HOM05D000610 ORTHO05D004774 8.8e-15 84.0 65 64.6
Ca_08446_v3 Cicer arietinum L. HOM05D000610 ORTHO05D004774 8.8e-15 84.0 65 64.6
CsaV3_4G011860 Cucumis sativus L. HOM05D000610 ORTHO05D004774 1.1e-14 83.6 65 63.1
MELO3C023103.2 Cucumis melo HOM05D000610 ORTHO05D004774 1.5e-14 83.2 65 63.1
C03p27900 Brassica napus HOM05D000610 ORTHO05D004774 2.0e-14 82.8 65 61.5
BolC3t15161H Brassica oleracea HOM05D000610 ORTHO05D004774 2.0e-14 82.8 65 61.5
Aa31LG1G23710 Aethionema arabicum HOM05D000610 ORTHO05D004774 2.5e-14 82.4 65 63.1
A03p23380 Brassica napus HOM05D000610 ORTHO05D004774 2.5e-14 82.4 65 61.5
BraA03t11555Z Brassica rapa HOM05D000610 ORTHO05D004774 2.5e-14 82.4 65 61.5
CARHR136790 Cardamine hirsuta HOM05D000610 ORTHO05D004774 4.3e-14 81.6 65 61.5
AUR62024461 Chenopodium quinoa HOM05D000610 ORTHO05D004774 4.3e-14 81.6 65 58.5
Sp4g23940 Schrenkiella parvula HOM05D000610 ORTHO05D004774 7.4e-14 80.9 65 58.5
Lalb_Chr25g0287161 Lupinus albus HOM05D000610 ORTHO05D004774 1.3e-13 80.1 65 58.5
Sed0024936 Sechium edule HOM05D000610 ORTHO05D004774 1.7e-13 79.7 65 63.1
Thhalv10016127m.g Eutrema salsugineum HOM05D000610 ORTHO05D004774 2.8e-13 79.0 65 60.0
Phvul.001G131150 Phaseolus vulgaris HOM05D000610 ORTHO05D004774 2.8e-13 79.0 65 58.5
Rhsim03G0027100 Rhododendron simsii HOM05D000610 ORTHO05D004774 6.3e-13 77.8 55 61.8
VMungo1383G1299 Vigna mungo HOM05D000610 ORTHO05D004774 3.1e-12 75.5 65 58.5
SMO266G0031 Selaginella moellendorffii HOM05D000610 ORTHO05D004774 6.9e-12 74.3 64 53.1
unitig_8.g3505 Utricularia gibba HOM05D000610 ORTHO05D004774 1.1e-09 67.0 57 57.9


User provided reference genes

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