Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 8.3e-126 453.8 234 100.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 8.4e-62 241.1 127 100.0
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 3.2e-53 212.6 127 82.7
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 3.2e-53 212.6 127 84.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 4.6e-52 208.8 128 83.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.8e-51 206.8 166 68.1
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.8e-51 206.8 157 70.1
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 2.3e-51 206.5 128 82.0
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.3e-51 206.5 157 69.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.3e-51 206.5 130 81.5
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.9e-51 205.7 128 81.2
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 5.1e-51 205.3 128 82.0
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 5.1e-51 205.3 158 69.6
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 5.1e-51 205.3 151 74.8
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 8.7e-51 204.5 144 74.3
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.7e-51 204.5 128 81.2
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 8.7e-51 204.5 152 70.4
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.5e-50 203.8 127 81.1
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 2.5e-50 203.0 148 71.6
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 4.3e-50 202.2 127 81.1
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.7e-50 201.8 154 72.7
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.7e-50 201.8 127 81.9
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 5.7e-50 201.8 127 81.9
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 9.7e-50 201.1 128 79.7
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 9.7e-50 201.1 128 79.7
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.6e-49 200.3 151 72.8
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.2e-49 199.9 128 79.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.2e-49 199.9 127 79.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.8e-49 199.5 127 80.3
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.7e-49 199.1 128 78.9
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.7e-49 199.1 128 78.9
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 3.7e-49 199.1 128 79.7
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 3.7e-49 199.1 128 78.1
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.7e-49 199.1 127 80.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 3.7e-49 199.1 128 78.1
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 4.8e-49 198.7 128 78.9
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.8e-49 198.7 127 79.5
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.8e-49 198.7 127 79.5
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.8e-49 198.7 127 78.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 6.3e-49 198.4 128 77.3
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 6.3e-49 198.4 128 77.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 8.2e-49 198.0 131 78.6
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 8.2e-49 198.0 154 70.8
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 8.2e-49 198.0 149 69.8
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 8.2e-49 198.0 127 80.3
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.1e-48 197.6 128 78.9
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.1e-48 197.6 128 78.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.1e-48 197.6 127 78.7
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.1e-48 197.6 127 79.5
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.4e-48 197.2 128 78.1
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.4e-48 197.2 127 78.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.8e-48 196.8 128 77.3
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.8e-48 196.8 127 79.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.4e-48 196.4 128 78.9
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.4e-48 196.4 127 78.0
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.4e-48 196.4 143 72.7
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 2.4e-48 196.4 143 73.4
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 3.1e-48 196.1 127 78.7
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 3.1e-48 196.1 127 78.0
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 5.3e-48 195.3 128 78.1
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 5.3e-48 195.3 148 68.9
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 5.3e-48 195.3 127 78.7
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 6.9e-48 194.9 128 76.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.9e-48 194.9 128 77.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 6.9e-48 194.9 128 76.6
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 9.1e-48 194.5 148 68.2
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 9.1e-48 194.5 127 78.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 9.1e-48 194.5 161 67.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 9.1e-48 194.5 128 75.8
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.2e-47 194.1 127 78.0
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.2e-47 194.1 127 77.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-47 193.7 127 76.4
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.5e-47 193.7 129 76.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 2.0e-47 193.4 128 76.6
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.0e-47 193.4 127 77.2
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.6e-47 193.0 128 76.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.4e-47 192.6 127 76.4
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.4e-47 192.6 143 71.3
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 4.5e-47 192.2 135 77.8
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 4.5e-47 192.2 127 79.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 4.5e-47 192.2 144 70.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.5e-47 192.2 162 64.2
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.5e-47 192.2 127 77.2
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 5.9e-47 191.8 128 75.0
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 5.9e-47 191.8 127 76.4
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.3e-46 190.7 127 79.5
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.7e-46 190.3 127 76.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.2e-46 189.9 127 76.4
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.2e-46 189.9 127 76.4
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 3.8e-46 189.1 127 73.2
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.8e-46 189.1 128 76.6
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 3.8e-46 189.1 127 74.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 5.0e-46 188.7 127 76.4
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 5.0e-46 188.7 127 75.6
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 6.5e-46 188.3 127 76.4
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 8.5e-46 188.0 128 73.4
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 8.5e-46 188.0 127 74.8
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.1e-45 187.6 128 78.9
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.1e-45 187.6 127 73.2
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.9e-45 186.8 127 73.2
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 3.2e-45 186.0 144 70.1
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.2e-45 185.7 127 73.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 4.2e-45 185.7 127 74.8
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.2e-45 184.9 128 72.7
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.2e-45 184.9 128 72.7
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 7.2e-45 184.9 128 74.2
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 9.4e-45 184.5 127 72.4
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.6e-44 183.7 127 74.0
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.6e-44 183.7 128 72.7
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-44 183.7 128 72.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-44 183.7 128 72.7
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-44 183.7 128 72.7
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.6e-44 183.7 127 72.4
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.1e-44 183.3 127 74.8
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.7e-44 183.0 155 64.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.7e-44 183.0 154 67.5
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.7e-44 183.0 127 72.4
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.7e-44 183.0 128 71.9
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.6e-44 182.6 127 76.4
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.1e-44 181.8 127 74.0
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.0e-43 181.0 127 74.8
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 2.3e-43 179.9 127 75.6
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 3.9e-43 179.1 138 71.0
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 8.8e-43 177.9 138 71.0
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 8.8e-43 177.9 127 74.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 2.0e-42 176.8 138 70.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 3.3e-42 176.0 127 74.0
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 5.7e-42 175.3 127 73.2
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.7e-42 175.3 127 73.2
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 5.7e-42 175.3 127 73.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.7e-42 175.3 127 73.2
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 5.7e-42 175.3 127 73.2
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 9.7e-42 174.5 127 74.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 9.7e-42 174.5 127 74.0
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 9.7e-42 174.5 127 74.0
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 9.7e-42 174.5 127 74.0
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 9.7e-42 174.5 127 74.0
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 5.3e-40 168.7 128 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 9.1e-40 167.9 130 63.8
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 9.4e-37 157.9 97 83.5
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.1e-36 155.2 131 64.1
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.9e-35 152.5 127 59.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.5e-34 150.6 97 79.4
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.9e-29 133.7 117 60.7
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.7e-28 129.0 90 76.7
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.8e-27 127.1 88 73.9
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 5.2e-19 99.0 137 42.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.6e-15 87.4 42 100.0
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.0e-14 84.7 47 85.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.2e-09 67.0 130 33.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 3.5e-07 59.7 32 84.4


User provided reference genes

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