Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 0.0e+00 1262.7 660 100.0
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 3.0e-104 383.6 223 87.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 5.8e-68 263.1 745 31.9
HPP92_028055 Vanilla planifolia HOM05D005664 ORTHO05D006509 9.1e-53 212.6 200 60.5
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-50 204.9 720 30.1
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.6e-49 201.8 765 28.9
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 4.4e-47 193.7 759 29.0
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 5.7e-47 193.4 719 29.6
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 3.1e-45 187.6 753 29.7
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 5.9e-44 183.3 749 29.4
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 7.7e-44 183.0 713 30.2
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 3.8e-43 180.6 773 27.2
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 2.1e-41 174.9 732 28.8
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.6e-41 174.1 855 26.3
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.0e-40 171.0 693 27.8
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 3.9e-40 170.6 707 28.7
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 6.7e-40 169.9 712 28.7
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.0e-39 168.3 772 26.4
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.3e-39 167.5 719 27.0
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 4.4e-39 167.2 753 28.7
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 4.4e-39 167.2 759 27.9
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.2e-38 164.9 697 27.8
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 3.7e-38 164.1 709 26.4
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.7e-38 164.1 882 24.3
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 3.7e-38 164.1 771 28.0
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 4.1e-37 160.6 710 28.0
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 4.5e-36 157.1 717 27.6
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.0e-35 156.0 692 27.6
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.0e-35 156.0 701 29.4
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 1.3e-35 155.6 707 28.1
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.5e-34 151.4 731 25.7
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 4.2e-34 150.6 758 26.6
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 2.7e-33 147.9 697 26.7
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.7e-33 147.9 726 27.0
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 4.7e-33 147.1 687 29.0
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.0e-32 146.0 688 28.8
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 1.8e-32 145.2 726 26.3
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 5.2e-32 143.7 731 25.3
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.5e-31 142.1 762 25.7
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 2.0e-31 141.7 687 27.1
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.3e-31 141.0 688 27.5
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 4.4e-31 140.6 688 28.8
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 9.7e-31 139.4 693 28.9
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 9.7e-31 139.4 758 25.7
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.7e-30 138.7 752 25.9
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.7e-30 138.7 733 26.3
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.2e-30 138.3 679 26.1
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 2.2e-30 138.3 734 26.8
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.8e-30 137.9 707 27.7
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.3e-30 136.7 692 28.2
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 6.3e-30 136.7 756 26.6
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 6.3e-30 136.7 787 26.8
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 8.3e-30 136.3 729 25.9
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.8e-29 135.2 758 25.9
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 3.1e-29 134.4 708 26.1
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 9.1e-29 132.9 776 25.9
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.6e-28 132.1 655 26.9
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 2.7e-28 131.3 685 27.4
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.7e-28 131.3 769 27.0
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.5e-28 130.6 784 26.0
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 4.5e-28 130.6 701 27.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 4.5e-28 130.6 765 26.0
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 5.9e-28 130.2 721 25.8
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 7.7e-28 129.8 763 26.5
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 7.7e-28 129.8 765 26.7
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.0e-27 129.4 702 28.5
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.7e-27 128.6 666 28.1
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 2.9e-27 127.9 705 27.5
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 6.5e-27 126.7 736 25.0
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.5e-26 124.8 790 29.2
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.6e-25 122.1 666 25.4
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 1.6e-25 122.1 229 39.7
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 3.6e-25 120.9 772 24.9
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 4.7e-25 120.6 681 24.7
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 6.1e-25 120.2 698 26.1
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.4e-24 119.0 725 24.8
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 3.0e-24 117.9 734 26.2
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 8.8e-24 116.3 713 25.2
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 8.8e-24 116.3 700 26.4
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.2e-23 115.9 758 24.9
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.5e-23 115.5 755 25.7
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 1.5e-23 115.5 777 23.4
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 3.4e-23 114.4 753 25.1
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.3e-22 112.5 763 25.2
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 2.8e-22 111.3 733 24.4
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 6.3e-22 110.2 839 24.8
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 6.3e-22 110.2 781 23.8
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-21 109.4 676 25.6
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.4e-21 108.2 747 25.8
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 7.0e-21 106.7 699 26.9
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 3.5e-20 104.4 686 24.2
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 7.7e-20 103.2 664 25.0
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.0e-19 102.8 177 39.0
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.3e-19 102.4 665 24.5
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.3e-19 101.7 685 24.8
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 2.9e-19 101.3 709 25.0
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.9e-19 101.3 757 26.3
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 8.6e-19 99.8 679 24.3
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 3.3e-18 97.8 684 25.1
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 4.2e-18 97.4 694 24.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 9.5e-18 96.3 273 34.1
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.1e-17 95.1 704 24.7
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.1e-17 95.1 720 24.7
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 2.8e-17 94.7 672 25.7
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 2.8e-17 94.7 700 24.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 4.7e-17 94.0 697 24.4
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 4.7e-17 94.0 687 24.7
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 4.7e-17 94.0 687 24.7
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 8.0e-17 93.2 701 25.1
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.3e-16 91.7 688 24.9
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 4.0e-16 90.9 673 24.5
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 6.8e-16 90.1 686 24.3
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 6.8e-16 90.1 686 24.3
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 6.8e-16 90.1 677 24.4
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 8.9e-16 89.7 742 23.9
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.5e-15 89.0 655 24.3
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.4e-15 87.8 667 24.9
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 3.4e-15 87.8 675 25.0
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 4.4e-15 87.4 698 25.1
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 4.4e-15 87.4 157 38.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 7.5e-15 86.7 646 24.1
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.3e-14 85.9 672 24.0
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 2.2e-14 85.1 663 23.5
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 8.3e-14 83.2 126 38.9
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 8.3e-14 83.2 748 22.2
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.7e-12 78.2 652 24.5
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 3.5e-12 77.8 706 24.6
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.3e-11 75.9 259 26.6
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 1.3e-11 75.9 379 26.9
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 3.9e-11 74.3 628 22.9
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 6.6e-11 73.6 390 27.7
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.1e-10 72.8 667 24.7
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.5e-10 72.4 673 24.4
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 3.1e-08 64.7 632 23.7
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 2.6e-07 61.6 95 38.9
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 7.5e-07 60.1 306 28.1


User provided reference genes

Program Settings