Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 1.2e-230 802.7 402 100.0
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 1.1e-101 374.4 332 58.7
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 3.2e-101 372.9 393 54.2
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 1.6e-100 370.5 334 59.6
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 1.6e-100 370.5 338 58.9
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 1.3e-99 367.5 349 56.7
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.8e-99 367.1 334 59.6
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 3.9e-99 365.9 332 57.2
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 1.5e-98 364.0 364 55.5
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.9e-98 363.6 344 58.4
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 3.3e-98 362.8 401 51.1
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 4.3e-98 362.5 333 57.7
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 4.3e-98 362.5 401 51.1
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 5.6e-98 362.1 347 56.2
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.3e-97 360.9 342 56.4
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 2.8e-97 359.8 334 58.7
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 3.6e-97 359.4 370 54.6
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 3.6e-97 359.4 344 55.2
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 4.8e-97 359.0 346 55.2
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 4.8e-97 359.0 334 57.2
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 6.2e-97 358.6 388 52.6
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 6.2e-97 358.6 352 56.0
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 8.1e-97 358.2 361 54.6
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 1.1e-96 357.8 333 58.3
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.4e-96 357.5 350 57.7
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 3.1e-96 356.3 334 57.5
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 4.0e-96 355.9 326 58.0
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.0e-96 355.9 350 57.1
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 5.3e-96 355.5 361 55.4
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 9.0e-96 354.8 336 56.2
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.2e-95 354.4 334 58.7
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 1.5e-95 354.0 348 56.3
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 2.0e-95 353.6 345 55.9
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 3.4e-95 352.8 341 56.6
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 4.5e-95 352.4 334 57.2
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 5.8e-95 352.1 349 55.6
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 5.8e-95 352.1 353 54.7
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 9.9e-95 351.3 350 55.4
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.7e-94 350.5 359 53.5
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 1.7e-94 350.5 339 58.4
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 1.7e-94 350.5 333 58.0
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 1.7e-94 350.5 339 55.8
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 2.9e-94 349.7 338 58.0
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.8e-94 349.4 346 55.2
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 4.9e-94 349.0 349 55.3
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 6.4e-94 348.6 341 55.4
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 8.4e-94 348.2 346 54.9
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 8.4e-94 348.2 334 55.4
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 8.4e-94 348.2 334 56.6
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.1e-93 347.8 351 54.7
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.4e-93 347.4 334 56.6
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 1.4e-93 347.4 345 56.2
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 3.2e-93 346.3 334 54.5
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 4.2e-93 345.9 341 55.1
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 5.5e-93 345.5 334 54.5
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 5.5e-93 345.5 353 54.1
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 7.1e-93 345.1 334 55.7
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.2e-92 344.4 317 60.3
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 2.1e-92 343.6 364 52.2
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 4.6e-92 342.4 334 54.2
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 7.9e-92 341.7 340 55.3
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.3e-91 340.9 340 55.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.3e-91 340.9 338 53.6
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 2.3e-91 340.1 334 55.7
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 3.0e-91 339.7 340 54.7
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 1.1e-90 337.8 340 55.0
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 1.1e-90 337.8 340 55.0
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 1.5e-90 337.4 349 54.2
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 1.5e-90 337.4 354 53.4
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.9e-90 337.0 333 55.9
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 7.4e-90 335.1 334 54.8
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 7.4e-90 335.1 333 55.3
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 2.4e-88 330.1 338 53.6
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 3.1e-88 329.7 353 52.1
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 5.3e-88 328.9 352 51.4
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 1.2e-87 327.8 307 57.3
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 2.6e-87 326.6 334 51.5
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 3.4e-87 326.2 373 51.2
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.0e-86 324.7 359 49.6
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 8.4e-86 321.6 344 52.9
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 8.4e-86 321.6 333 54.7
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 1.9e-85 320.5 339 53.7
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 3.2e-85 319.7 335 51.9
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 1.6e-84 317.4 333 54.4
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 2.7e-84 316.6 333 52.9
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 3.5e-84 316.2 338 50.9
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 4.6e-84 315.8 338 52.4
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 4.6e-84 315.8 334 50.9
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 3.0e-83 313.2 308 55.2
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 2.5e-82 310.1 342 50.6
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 9.6e-82 308.1 315 54.6
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 2.1e-81 307.0 302 54.6
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 4.1e-80 302.8 302 54.3
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 1.0e-78 298.1 322 51.9
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 8.5e-78 295.0 351 49.9
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 3.9e-75 286.2 376 46.5
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 1.9e-74 283.9 271 57.2
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.7e-70 270.8 323 46.4
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 9.4e-69 265.0 347 45.5
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 7.4e-66 255.4 361 44.0
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 5.3e-64 249.2 215 59.5
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 6.9e-64 248.8 247 55.1
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.4e-63 246.5 198 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.2e-60 238.0 333 45.0
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 7.9e-60 235.3 314 46.8
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 5.2e-59 232.6 252 51.2
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 1.1e-58 231.5 256 52.0
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 7.4e-58 228.8 174 66.1
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 2.8e-57 226.9 341 41.3
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 1.2e-55 221.5 243 49.4
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 2.1e-52 210.7 331 41.7
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 8.0e-52 208.8 333 38.7
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 5.7e-42 176.0 399 35.8
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.7e-38 164.5 315 37.8
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 2.9e-38 163.7 128 62.5
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 4.7e-28 129.8 94 67.0
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 6.8e-27 125.9 103 58.3
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 6.8e-27 125.9 103 58.3
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 4.7e-20 103.2 96 54.2
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 4.7e-20 103.2 96 54.2
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 3.1e-19 100.5 90 53.3
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 4.0e-19 100.1 96 52.1
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.0e-18 97.8 133 42.9
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 5.8e-18 96.3 94 56.4
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 4.3e-13 80.1 54 66.7
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.2e-07 62.0 79 40.5


User provided reference genes

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