Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 0.0e+00 2124.4 1107 100.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1148.3 1125 57.6
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1097.8 1133 55.9
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1092.8 1112 56.9
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1088.6 1119 55.7
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1083.2 1103 55.8
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1078.9 1103 55.7
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 7.6e-312 1074.7 1124 54.1
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 2.2e-309 1065.8 1121 54.4
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 3.7e-309 1065.1 1114 55.0
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 1.4e-308 1063.1 998 57.9
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 1.8e-308 1062.8 1109 55.1
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 3.1e-308 1062.0 1113 54.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 1.0e-306 1057.0 1101 54.9
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 8.6e-306 1053.9 1110 54.1
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 1.9e-305 1052.7 1101 53.6
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 2.5e-305 1052.4 1108 53.5
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.4e-303 1046.6 1110 54.4
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 3.0e-303 1045.4 1099 53.7
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 1.2e-302 1043.5 1086 54.2
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 1.5e-302 1043.1 1115 54.2
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.8e-301 1038.9 1108 54.1
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 3.7e-301 1038.5 1111 54.5
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 6.3e-301 1037.7 1037 56.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.8e-300 1036.2 1100 53.5
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 1.8e-300 1036.2 1113 52.6
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 1.8e-300 1036.2 1116 53.0
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.2e-299 1033.5 1048 54.6
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.6e-299 1033.1 1106 54.0
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 2.7e-299 1032.3 1107 53.7
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 5.9e-299 1031.2 1105 53.6
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 5.9e-299 1031.2 1049 55.1
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.5e-297 1026.5 1105 53.3
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 1.2e-296 1023.5 1065 54.0
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 2.1e-296 1022.7 1091 53.4
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 2.8e-296 1022.3 1108 53.9
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 2.3e-295 1019.2 1063 55.5
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.5e-294 1016.5 1092 53.2
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 2.6e-294 1015.8 1111 53.5
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 3.4e-294 1015.4 1126 52.2
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 1.7e-293 1013.1 1080 54.0
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 2.9e-293 1012.3 1112 53.1
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 2.9e-293 1012.3 1111 52.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 3.7e-293 1011.9 1111 53.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 4.9e-293 1011.5 1083 53.4
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 1.1e-292 1010.4 1081 52.9
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 9.2e-292 1007.3 1115 53.5
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 2.7e-291 1005.7 1069 54.1
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 7.8e-291 1004.2 1077 53.5
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 3.9e-290 1001.9 1074 53.4
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 8.0e-288 994.2 976 56.4
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 2.3e-287 992.6 1100 53.5
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 3.1e-287 992.3 1068 54.4
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 5.2e-287 991.5 1112 52.3
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 1.2e-286 990.3 1044 54.5
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 5.8e-286 988.0 1042 54.8
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 1.3e-285 986.9 1056 53.0
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 1.3e-285 986.9 1056 53.0
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.3e-285 986.9 1070 53.8
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 4.9e-285 984.9 960 56.9
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 6.4e-285 984.6 1111 52.3
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 1.1e-284 983.8 1117 52.3
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 1.6e-283 979.9 1089 52.7
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 2.7e-283 979.2 1110 53.1
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 1.3e-282 976.9 1111 51.9
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 6.6e-282 974.5 1094 52.2
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 1.4e-279 966.8 1104 52.7
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.1e-279 965.7 978 55.1
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 3.1e-279 965.7 1102 52.9
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 2.6e-278 962.6 1106 50.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 3.4e-278 962.2 1104 51.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 4.4e-278 961.8 1124 50.4
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 2.2e-277 959.5 1035 53.5
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 4.9e-277 958.4 1106 52.3
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 4.9e-277 958.4 1047 53.0
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 3.0e-274 949.1 1059 51.4
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 5.1e-274 948.3 1041 51.7
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 2.6e-270 936.0 1127 50.2
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 2.4e-268 929.5 1077 50.8
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 1.6e-267 926.8 957 54.4
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 6.0e-267 924.9 1080 51.7
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 5.1e-266 921.8 1110 49.2
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 5.6e-265 918.3 1089 50.0
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 1.3e-264 917.1 839 59.0
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 1.8e-250 870.2 835 55.7
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 5.6e-249 865.1 841 55.9
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 7.4e-249 864.8 1069 48.9
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.6e-248 863.6 1014 50.7
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.1e-244 850.9 831 55.0
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 3.2e-244 849.4 851 54.6
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 8.7e-242 841.3 831 53.9
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 5.7e-241 838.6 1064 47.3
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 3.7e-240 835.9 834 54.8
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 8.2e-240 834.7 1075 47.7
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 2.4e-239 833.2 831 53.9
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 2.6e-238 829.7 840 54.6
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 1.2e-235 820.8 846 52.8
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.3e-234 817.4 830 53.0
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 2.7e-203 713.4 934 46.0
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 7.8e-166 589.0 1148 38.2
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 6.0e-158 562.8 991 37.8
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.1e-154 550.4 737 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 2.9e-152 543.9 1082 37.0
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 6.9e-146 522.7 660 48.5
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.3e-133 481.9 468 54.3
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 2.4e-130 471.1 1123 34.1
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 7.1e-127 459.5 1143 34.6
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 3.2e-119 434.1 416 56.7
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.0e-109 401.0 459 47.9
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-80 305.4 336 50.9
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-80 305.4 336 50.9
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-80 305.4 336 50.9
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 8.0e-78 296.6 319 52.0
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.5e-60 239.2 1232 26.1
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 4.6e-57 227.6 245 53.1
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 6.0e-57 227.3 239 54.0
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 3.1e-53 214.9 270 47.0
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 8.9e-53 213.4 144 68.1
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 2.2e-51 208.8 185 65.4
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.8e-44 184.1 303 41.3
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 3.8e-43 181.4 246 50.8
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 8.4e-43 180.3 233 50.6
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 9.9e-28 130.2 252 38.1
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.8e-24 119.4 293 36.5
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 8.7e-24 117.1 82 64.6
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 2.1e-22 112.5 121 45.5
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 2.9e-19 102.1 115 57.4
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 3.8e-19 101.7 72 65.3
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 2.4e-18 99.0 133 39.1
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 5.5e-18 97.8 188 42.0
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 5.5e-18 97.8 96 60.4
HPP92_028301 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.3e-15 88.2 84 58.3
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 1.4e-13 83.2 61 62.3
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 4.0e-13 81.6 72 58.3
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 2.6e-12 79.0 58 70.7
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 5.8e-12 77.8 62 61.3
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.5e-11 74.3 138 31.2
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-10 71.6 124 30.6
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.1e-10 70.9 124 33.9
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 2.1e-09 69.3 57 57.9
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.1e-09 69.3 178 30.3
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.0e-08 67.0 178 30.3
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.0e-08 67.0 178 30.3
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.0e-08 65.5 149 31.5
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-07 63.2 134 29.1
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.5e-07 62.4 127 32.3
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.4e-07 60.8 178 29.8
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.3e-06 60.1 153 32.7
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.6e-06 59.7 127 30.7


User provided reference genes

Program Settings