Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.3e-64 249.6 129 100.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.7e-60 234.2 122 100.0
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.9e-25 117.9 129 45.0
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.0e-24 117.1 120 45.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.8e-24 115.2 122 47.5
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.0e-24 114.8 120 45.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.6e-24 114.0 120 45.0
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.6e-24 114.0 120 44.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-23 113.6 127 45.7
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-23 113.6 127 45.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.1e-23 113.6 120 43.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.9e-23 112.8 120 43.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.5e-23 112.5 123 43.1
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.3e-23 112.1 126 45.2
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 5.6e-23 111.3 128 45.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.2e-22 110.2 134 44.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-22 110.2 120 43.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-22 109.8 128 43.0
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.6e-22 109.8 120 42.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.6e-22 109.8 124 47.6
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.1e-22 109.4 124 45.2
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.1e-22 109.4 128 45.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.8e-22 109.0 123 40.7
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.8e-22 109.0 128 42.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.8e-22 109.0 128 42.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.8e-22 109.0 128 42.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.8e-22 109.0 128 45.3
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.6e-22 108.6 128 43.8
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 4.7e-22 108.2 125 42.4
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 8.0e-22 107.5 120 45.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.0e-21 107.1 121 41.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.0e-21 107.1 128 44.5
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.4e-21 106.7 131 45.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.8e-21 106.3 120 43.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.3e-21 105.9 123 45.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.3e-21 105.9 129 39.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.0e-21 105.5 123 42.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.0e-21 105.5 120 45.8
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 4.0e-21 105.1 129 42.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 5.2e-21 104.8 124 43.5
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.2e-21 104.8 124 42.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.2e-21 104.8 127 40.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 6.8e-21 104.4 131 45.8
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 6.8e-21 104.4 126 38.9
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.9e-21 104.0 129 42.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.9e-21 104.0 124 42.7
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.9e-21 104.0 133 43.6
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.2e-20 103.6 122 38.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.2e-20 103.6 128 43.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.2e-20 103.6 120 42.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.5e-20 103.2 121 40.5
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.5e-20 103.2 132 43.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.5e-20 103.2 123 39.0
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-20 102.8 127 40.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.6e-20 102.4 125 40.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.6e-20 102.4 126 42.9
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.6e-20 102.4 121 41.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.4e-20 101.7 120 43.3
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 4.4e-20 101.7 125 37.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 4.4e-20 101.7 118 40.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 4.4e-20 101.7 127 40.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.7e-20 101.3 130 42.3
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.7e-20 101.3 124 40.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 5.7e-20 101.3 125 43.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.7e-20 101.3 127 39.4
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.7e-20 101.3 127 39.4
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.7e-20 101.3 127 39.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.7e-20 101.3 127 39.4
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.3e-19 100.1 127 42.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.3e-19 100.1 120 43.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-19 100.1 123 41.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.3e-19 100.1 126 41.3
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.3e-19 100.1 127 38.6
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.3e-19 100.1 129 37.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-19 99.8 127 42.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.7e-19 99.8 126 38.9
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.7e-19 99.8 123 43.9
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.2e-19 99.4 128 39.8
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.2e-19 99.4 119 43.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.9e-19 99.0 126 42.9
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.9e-19 99.0 121 38.0
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.7e-19 98.6 125 38.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 4.9e-19 98.2 126 38.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.9e-19 98.2 121 35.5
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.9e-19 98.2 121 44.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.9e-19 98.2 122 38.5
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 6.4e-19 97.8 127 41.7
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 6.4e-19 97.8 121 35.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 6.4e-19 97.8 123 39.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 6.4e-19 97.8 123 39.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 6.4e-19 97.8 132 41.7
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 8.3e-19 97.4 117 41.0
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.1e-18 97.1 132 40.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-18 97.1 123 41.5
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-18 96.7 127 40.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.8e-18 96.3 123 40.7
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.4e-18 95.9 129 36.4
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.4e-18 95.9 122 36.9
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.2e-18 95.5 118 42.4
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 3.2e-18 95.5 122 40.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.1e-18 95.1 112 45.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 7.0e-18 94.4 120 44.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 7.0e-18 94.4 126 38.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 9.2e-18 94.0 118 37.3
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 9.2e-18 94.0 118 39.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-17 93.6 122 41.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.6e-17 93.2 126 41.3
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.0e-17 92.8 118 36.4
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-17 92.8 127 37.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.6e-17 91.7 112 43.8
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.6e-17 91.7 126 40.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.6e-17 91.7 123 41.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 7.8e-17 90.9 117 39.3
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 7.8e-17 90.9 118 36.4
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.0e-16 90.5 118 38.1
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.7e-16 89.7 117 35.9
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.3e-16 89.4 123 38.2
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.3e-16 89.4 118 34.7
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.0e-16 89.0 118 34.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.0e-16 88.2 121 38.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 6.6e-16 87.8 118 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.1e-15 87.0 119 42.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.5e-15 85.9 119 38.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.6e-15 84.7 118 39.8
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.3e-15 84.3 127 37.8
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.2e-14 83.6 117 32.5
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.1e-14 82.8 123 36.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.8e-14 82.4 123 36.6
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.8e-14 82.4 112 39.3
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.8e-14 82.4 112 39.3
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.8e-14 82.4 120 37.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.6e-14 82.0 97 38.1
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 4.4e-12 75.1 118 36.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.8e-12 73.9 118 33.9
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.3e-11 73.6 101 39.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 9.2e-10 67.4 93 32.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.0e-09 66.2 118 35.6
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.0e-09 64.7 81 33.3
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 8.6e-08 60.8 121 34.7
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 8.1e-06 54.3 88 30.7


User provided reference genes

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