Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.6e-56 221.9 113 100.0
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.7e-20 102.8 116 50.0
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.9e-20 101.7 114 56.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 5.0e-20 101.3 111 57.7
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 5.0e-20 101.3 111 57.7
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 6.6e-20 100.9 109 55.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.1e-19 100.1 99 58.6
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.5e-19 99.8 108 52.8
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.5e-19 99.8 107 55.1
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.5e-19 99.0 119 49.6
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 4.3e-19 98.2 83 63.9
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.3e-19 98.2 82 62.2
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.6e-19 97.8 112 56.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 9.5e-19 97.1 111 50.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 9.5e-19 97.1 112 51.8
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.2e-18 96.7 100 57.0
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.6e-18 96.3 106 53.8
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.6e-18 96.3 106 53.8
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.6e-18 96.3 106 53.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.6e-18 96.3 81 64.2
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.6e-18 96.3 116 48.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.1e-18 95.9 83 62.7
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.1e-18 95.9 105 52.4
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.1e-18 95.9 100 53.0
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.1e-18 95.9 83 62.7
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.8e-18 95.5 113 49.6
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.8e-18 95.5 116 47.4
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.8e-18 95.5 112 53.6
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.8e-18 95.5 105 53.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 4.7e-18 94.7 93 57.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.7e-18 94.7 109 53.2
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.7e-18 94.7 82 61.0
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 6.2e-18 94.4 113 54.9
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.2e-18 94.4 82 64.6
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.2e-18 94.4 102 55.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.2e-18 94.4 102 55.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 8.0e-18 94.0 103 53.4
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.0e-18 94.0 113 50.4
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 8.0e-18 94.0 78 64.1
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-17 93.6 104 52.9
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.1e-17 93.6 104 52.9
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.1e-17 93.6 114 48.2
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.1e-17 93.6 78 62.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.1e-17 93.6 93 57.0
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.1e-17 93.6 83 63.9
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.1e-17 93.6 90 55.6
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.4e-17 93.2 92 57.6
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.4e-17 93.2 84 59.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.4e-17 93.2 78 65.4
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.4e-17 93.2 83 59.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.4e-17 93.2 93 59.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.4e-17 93.2 82 61.0
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.4e-17 93.2 116 50.9
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.4e-17 93.2 84 59.5
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.8e-17 92.8 104 51.9
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.3e-17 92.4 83 59.0
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 2.3e-17 92.4 98 54.1
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.3e-17 92.4 99 51.5
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.3e-17 92.4 77 64.9
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 2.3e-17 92.4 110 53.6
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.3e-17 92.4 94 55.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.3e-17 92.4 104 52.9
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.3e-17 92.4 95 54.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.1e-17 92.0 100 53.0
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.1e-17 92.0 115 48.7
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 4.0e-17 91.7 107 49.5
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 4.0e-17 91.7 116 50.0
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 4.0e-17 91.7 89 58.4
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.2e-17 91.3 107 50.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.8e-17 90.9 84 60.7
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 6.8e-17 90.9 121 48.8
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.8e-17 90.9 100 54.0
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 8.9e-17 90.5 103 50.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.9e-17 90.5 100 54.0
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.9e-17 90.5 100 54.0
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 8.9e-17 90.5 100 54.0
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 8.9e-17 90.5 120 49.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.2e-16 90.1 83 61.4
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.2e-16 90.1 83 61.4
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.5e-16 89.7 114 47.4
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.5e-16 89.7 100 51.0
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.5e-16 89.7 93 52.7
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.5e-16 89.7 56 78.6
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.0e-16 89.4 89 58.4
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.0e-16 89.4 78 60.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.0e-16 89.4 84 59.5
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.6e-16 89.0 82 56.1
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.6e-16 89.0 82 56.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.6e-16 89.0 82 56.1
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.6e-16 89.0 83 56.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.4e-16 88.2 120 47.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 5.8e-16 87.8 89 55.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 5.8e-16 87.8 83 59.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.8e-16 87.8 56 75.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 7.5e-16 87.4 89 57.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 7.5e-16 87.4 89 56.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 7.5e-16 87.4 89 56.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 7.5e-16 87.4 89 56.2
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 9.8e-16 87.0 78 61.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.3e-15 86.7 51 78.4
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.3e-15 86.7 84 56.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.7e-15 86.3 75 62.7
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-15 86.3 83 60.2
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-15 85.5 83 60.2
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.9e-15 85.5 54 74.1
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 3.7e-15 85.1 100 52.0
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 3.7e-15 85.1 93 55.9
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 4.9e-15 84.7 93 50.5
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.9e-15 84.7 123 43.1
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 4.9e-15 84.7 77 58.4
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 6.4e-15 84.3 92 55.4
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 6.4e-15 84.3 92 55.4
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.1e-14 83.6 115 48.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.4e-14 82.4 86 51.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.2e-14 82.0 118 49.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-13 80.1 56 67.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.5e-13 78.6 82 52.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.6e-13 78.2 75 57.3
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 7.8e-13 77.4 44 81.8
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.7e-12 76.3 78 55.1
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.3e-12 75.9 105 41.0
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.6e-12 74.3 74 52.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.6e-12 74.3 93 46.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.5e-11 73.2 74 52.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.5e-11 73.2 46 76.1
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.9e-11 72.8 44 75.0
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 7.3e-11 70.9 115 41.7
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 2.1e-10 69.3 95 45.3
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 5.2e-09 64.7 64 54.7
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 8.9e-09 63.9 61 59.0
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.4e-08 61.6 41 68.3
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.4e-08 61.6 87 48.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 9.9e-08 60.5 74 52.7
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-07 60.1 91 40.7
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.9e-07 58.9 80 42.5
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.9e-06 56.2 37 67.6


User provided reference genes

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