Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 3.0e-268 927.9 468 100.0
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 1.1e-118 431.0 464 50.2
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.3e-114 417.5 462 47.6
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 8.5e-114 414.8 475 47.4
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.1e-113 414.5 444 48.0
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 4.7e-112 409.1 444 48.6
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 4.4e-110 402.5 452 46.0
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.1e-108 397.9 446 48.0
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 3.1e-108 396.4 457 46.0
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.6e-107 394.0 475 45.1
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.6e-107 394.0 427 46.1
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 1.0e-106 391.3 463 44.9
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.9e-106 389.8 470 43.8
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 6.5e-106 388.7 429 46.6
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 6.5e-106 388.7 462 43.9
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 3.2e-105 386.3 474 43.5
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 4.2e-105 386.0 457 46.0
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 5.5e-105 385.6 449 45.7
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 3.0e-103 379.8 445 44.7
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.2e-102 377.9 454 44.7
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 2.0e-102 377.1 448 43.8
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 2.0e-102 377.1 445 44.3
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 2.2e-101 373.6 445 44.7
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.2e-101 373.6 417 46.0
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 2.8e-101 373.2 446 43.7
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.8e-101 373.2 435 43.2
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 3.7e-101 372.9 413 47.7
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 3.7e-101 372.9 436 45.0
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 4.9e-101 372.5 436 45.0
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 6.3e-101 372.1 413 47.0
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 6.3e-101 372.1 452 42.3
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 8.3e-101 371.7 455 43.5
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 1.1e-100 371.3 457 42.0
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 1.4e-100 370.9 442 42.1
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 1.4e-100 370.9 444 44.8
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 1.4e-100 370.9 435 46.9
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.4e-100 370.9 420 45.0
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 1.8e-100 370.5 411 46.7
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.4e-100 370.2 439 45.1
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 4.1e-100 369.4 436 45.2
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.2e-99 367.9 442 44.1
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 1.6e-99 367.5 412 47.3
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.0e-99 367.1 409 47.4
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 2.0e-99 367.1 466 42.1
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 2.7e-99 366.7 412 47.1
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 3.5e-99 366.3 448 42.4
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 5.9e-99 365.5 461 44.0
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 5.9e-99 365.5 429 44.8
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 5.9e-99 365.5 459 42.0
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 1.3e-98 364.4 442 43.9
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.3e-98 364.4 444 42.3
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.3e-98 364.4 437 44.4
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 1.7e-98 364.0 408 45.3
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 2.3e-98 363.6 412 46.8
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 2.3e-98 363.6 445 42.0
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 2.9e-98 363.2 448 43.3
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 5.0e-98 362.5 413 45.8
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 5.0e-98 362.5 442 42.5
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 6.6e-98 362.1 425 44.0
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 6.6e-98 362.1 460 42.2
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.1e-97 361.3 442 45.7
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 1.1e-97 361.3 444 41.7
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 1.9e-97 360.5 424 45.5
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.9e-97 360.5 467 40.5
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 2.5e-97 360.1 419 45.6
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 2.5e-97 360.1 444 41.7
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 3.3e-97 359.8 448 42.2
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 4.2e-97 359.4 445 42.7
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 7.2e-97 358.6 459 44.2
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 7.2e-97 358.6 448 41.7
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 7.2e-97 358.6 459 42.7
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 9.5e-97 358.2 415 45.8
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 9.5e-97 358.2 444 42.3
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 1.2e-96 357.8 431 45.5
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 1.2e-96 357.8 461 43.4
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 2.1e-96 357.1 420 45.5
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 2.1e-96 357.1 461 42.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.8e-96 356.7 455 41.1
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 3.6e-96 356.3 454 41.4
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 4.7e-96 355.9 386 47.2
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 6.1e-96 355.5 444 41.4
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 8.0e-96 355.1 415 45.1
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 1.4e-95 354.4 421 43.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.4e-95 354.4 447 41.8
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 1.8e-95 354.0 448 42.6
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.3e-95 353.6 422 45.0
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 6.8e-95 352.1 452 40.5
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 6.8e-95 352.1 441 43.5
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 2.0e-94 350.5 419 43.9
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.6e-94 350.1 425 44.7
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 5.7e-94 349.0 413 43.6
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 5.7e-94 349.0 362 49.2
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 7.5e-94 348.6 436 42.0
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 9.8e-94 348.2 456 41.4
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.3e-93 347.8 426 43.2
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.7e-93 347.4 384 47.7
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 2.2e-93 347.1 433 40.4
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.2e-93 347.1 387 45.2
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.7e-93 346.3 374 48.7
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 8.3e-93 345.1 433 42.5
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.3e-93 345.1 427 43.6
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 8.3e-93 345.1 458 41.5
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 1.1e-92 344.7 427 41.7
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 1.4e-92 344.4 428 41.4
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 1.8e-92 344.0 366 48.6
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 1.8e-92 344.0 427 42.4
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 2.4e-92 343.6 375 48.0
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 3.2e-92 343.2 461 39.7
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 4.1e-92 342.8 462 41.1
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 4.1e-92 342.8 452 42.5
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 5.4e-92 342.4 455 42.4
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 7.0e-92 342.0 448 41.7
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 9.2e-92 341.7 394 45.7
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 2.7e-91 340.1 394 44.9
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 3.5e-91 339.7 461 42.7
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 3.5e-91 339.7 375 46.7
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.9e-91 339.0 462 41.3
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 1.7e-90 337.4 372 48.4
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.7e-90 337.4 367 46.9
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 2.3e-90 337.0 393 43.8
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 3.9e-90 336.3 455 40.2
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 5.0e-90 335.9 432 43.8
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 1.9e-89 334.0 417 42.0
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 5.6e-89 332.4 443 41.5
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 8.9e-87 325.1 376 42.6
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.0e-86 323.9 363 46.6
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 3.4e-86 323.2 370 44.9
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 9.2e-84 315.1 333 47.1
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 1.7e-82 310.8 452 39.6
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 8.6e-82 308.5 454 39.2
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.5e-81 307.8 405 42.7
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.1e-79 300.1 429 38.7
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.1e-75 287.3 316 45.3
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.6e-72 277.7 360 43.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 4.4e-70 269.6 323 45.5
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.7e-69 267.7 423 36.4
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 3.7e-69 266.5 415 35.7
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 8.4e-69 265.4 364 41.5
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.9e-66 256.5 456 36.6
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 2.4e-60 237.3 310 40.6
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 4.2e-60 236.5 444 34.2
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 3.5e-59 233.4 258 47.7
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 4.3e-57 226.5 298 42.3
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.8e-55 221.1 272 42.6
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 3.1e-47 193.7 405 32.3
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 9.0e-39 165.6 204 42.2
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.5e-33 147.5 151 49.7
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.2e-28 130.6 162 41.4
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 1.1e-23 115.5 377 28.1
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 2.4e-23 114.4 193 32.1
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 2.0e-22 111.3 106 51.9
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.0e-18 99.0 353 26.1
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 1.7e-16 91.7 171 30.4
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 6.5e-13 79.7 67 59.7
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 5.5e-12 76.6 81 44.4
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 7.2e-12 76.3 65 55.4
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 7.9e-11 72.8 150 32.0
MCO07G371 Micromonas commoda HOM05D004273 ORTHO05D005041 1.3e-08 65.5 211 21.3
Gohir.A13G159900 Gossypium hirsutum HOM05D001180 ORTHO05D001055 9.1e-07 59.3 196 24.5
Gorai.013G197600 Gossypium raimondii HOM05D001180 ORTHO05D001055 9.1e-07 59.3 196 24.5
SMO194G0019 Selaginella moellendorffii HOM05D000394 ORTHO05D000299 1.6e-06 58.5 217 24.9
AagrBONN_evm.TU.Sc2ySwM_228.1088 Anthoceros agrestis HOM05D000394 ORTHO05D000299 2.6e-06 57.8 239 26.4
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 2.6e-06 57.8 41 58.5
Pp3c9_9050 Physcomitrium patens HOM05D000394 ORTHO05D000299 3.5e-06 57.4 266 25.2
Lsat_1_v5_gn_4_24780 Lactuca sativa HOM05D001471 ORTHO05D001325 5.9e-06 56.6 212 25.5
Lsat_1_v5_gn_4_84360 Lactuca sativa HOM05D001471 ORTHO05D001325 7.7e-06 56.2 220 25.5


User provided reference genes

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